Construct: ORF ccsbBroadEn_07144
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008736.1_s300c1, BRDN0000398126
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZFP37 (7539)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7539 | ZFP37 | ZFP37 zinc finger protein | NM_003408.3 | 99.9% | 99.8% | 20T>A |
| 2 | human | 7539 | ZFP37 | ZFP37 zinc finger protein | NM_001282518.2 | 99.7% | 99.6% | 20T>A;132_134delGAA |
| 3 | human | 7539 | ZFP37 | ZFP37 zinc finger protein | NM_001282515.2 | 97.6% | 97.5% | 20T>A;132_176del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1959
- ORF length:
- 1890
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCGGTCTCC AGCGGCGACC AGATTCTGAC AAAGCCAGAG ACCGTGGACC 121 GGAGGAGAAG TGCGGAAACG ACCAAAGAGG CCGGGCGACC ACTGGAGATG GCTGTGTCCG 181 AGCCCGAGGC CAGCGCCGCG GAATGGAAGC AACTGGATCC TGCTCAGAGC AACCTGTATA 241 ATGATGTGAT GCTGGAGAAC TACTGCAACC AAGCCTCAAT GGGGTGTCAA GCTCCCAAAC 301 CAGACATGAT CTCCAAGTTG GAAAAAGGAG AAGCACCATG GTTGGGGAAG GGGAAAAGAC 361 CCAGTCAAGG TTGTCCAAGT AAAATAGCAA GACCCAAGCA AAAAGAAACT GATGGAAAAG 421 TCCAGAAAGA TGATGACCAG CTTGAAAATA TCCAGAAATC TCAAAACAAA CTCCTCAGGG 481 AAGTTGCAGT CAAGAAGAAA ACTCAAGCTA AGAAGAATGG CAGTGACTGT GGTTCACTGG 541 GGAAAAAAAA TAATTTGCAT AAAAAACATG TTCCTTCAAA GAAAAGGCTT CTTAAATTTG 601 AGTCATGTGG AAAAATTTTG AAACAGAATT TAGATTTACC TGATCACTCA AGAAACTGTG 661 TAAAAAGGAA ATCTGATGCA GCTAAAGAAC ACAAGAAGTC ATTCAACCAT AGCTTATCTG 721 ATACAAGGAA AGGCAAAAAG CAAACTGGAA AGAAACATGA GAAATTATCC AGCCATAGCT 781 CATCTGATAA GTGTAACAAA ACTGGCAAAA AACATGACAA ATTATGCTGT CATAGTTCAT 841 CCCATATTAA ACAGGACAAA ATTCAAACTG GAGAGAAACA TGAGAAATCA CCCAGCCTTA 901 GCTCATCTAC TAAGCATGAA AAACCTCAAG CTTGTGTGAA ACCCTATGAA TGTAATCAAT 961 GTGGAAAGGT TCTCAGCCAT AAACAAGGAC TCATTGACCA TCAGAGAGTT CATACTGGGG 1021 AGAAACCATA TGAATGTAAT GAATGTGGGA TAGCCTTTAG CCAAAAGTCA CACCTTGTTG 1081 TACATCAGAG AACTCACACC GGAGAAAAAC CATATGAATG TATTCAGTGT GGCAAAGCCC 1141 ATGGTCATAA ACATGCACTC ACTGACCATC TAAGAATTCA TACTGGAGAA AAGCCCTATG 1201 AATGTGCTGA ATGTGGGAAA ACCTTCAGAC ACAGCTCAAA CCTTATTCAA CATGTGAGAT 1261 CTCACACAGG TGAGAAGCCA TATGAATGTA AGGAATGTGG GAAGTCTTTT AGGTATAACT 1321 CATCTCTTAC CGAACATGTG AGAACACATA CAGGTGAAAT ACCATATGAA TGCAATGAAT 1381 GTGGAAAAGC CTTTAAGTAT AGCTCATCCC TTACTAAACA CATGAGAATT CATACAGGTG 1441 AGAAACCCTT TGAATGTAAT GAATGTGGGA AAGCTTTCAG CAAGAAGTCA CACCTCATTA 1501 TACATCAAAG AACTCATACT AAGGAGAAAC CTTATAAATG TAATGAGTGT GGAAAAGCCT 1561 TTGGACATAG CTCATCTCTT ACTTACCATA TGAGAACTCA TACAGGTGAA AGTCCCTTTG 1621 AATGTAATCA ATGTGGGAAA GGCTTTAAAC AAATTGAAGG CCTTACTCAA CATCAGAGAG 1681 TTCATACTGG AGAGAAACCG TATGAGTGTA ATGAATGTGG GAAAGCCTTT AGCCAAAAGT 1741 CTCACCTCAT TGTACATCAG AGAACTCATA CTGGGGAGAA ACCTTATGAA TGTAACGAAT 1801 GTGAAAAAGC CTTTAATGCA AAATCACAGC TTGTTATACA TCAGCGATCC CACACTGGAG 1861 AAAAACCCTA TGAATGTAAT GAATGTGGGA AAACTTTCAA ACAAAATGCA TCCCTAACCA 1921 AACATGTGAA AACTCATTCA GAAGATAAAT CTCATGAGTT GCCAACTTTC TTGTACAAAG 1981 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac