Construct: ORF ccsbBroadEn_07158
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000475.1_s300c1, BRDN0000390509
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF74 (7625)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7625 | ZNF74 | zinc finger protein 74 | NM_001256524.1 | 99.9% | 99.8% | 512T>C |
| 2 | human | 7625 | ZNF74 | zinc finger protein 74 | NM_003426.4 | 99.9% | 99.8% | 512T>C |
| 3 | human | 7625 | ZNF74 | zinc finger protein 74 | NM_001256525.2 | 88.9% | 88.8% | 0_1ins213;299T>C |
| 4 | human | 7625 | ZNF74 | zinc finger protein 74 | NR_046282.2 | 48.3% | (many diffs) | |
| 5 | human | 7625 | ZNF74 | zinc finger protein 74 | NM_001256523.2 | 27.5% | 7.3% | 32_33ins86;426T>C;534_535ins1312 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1998
- ORF length:
- 1932
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GATCCCTGCC CCGGAGCCCG AGAAGACAGC TCTTTCCTCT CAGGATCCTG 121 CTCTTTCCCT GAAAGAGAAT CTCGAGGATA TATCGGGTTG GGGTCTTCCC GAAGCCAGGT 181 CCAAGGAATC GGTGAGTTTC AAGGATGTGG CTGTGGACTT CACCCAGGAG GAGTGGGGTC 241 AACTAGACTC CCCTCAGAGG GCCTTGTACC GGGATGTGAT GTTGGAGAAC TACCAGAACC 301 TTCTTGCCCT AGGACCTCCA CTGCACAAGC CAGATGTGAT CTCTCATCTG GAACGAGGCG 361 AGGAGCCATG GAGCATGCAG AGGGAAGTCC CCAGAGGGCC CTGTCCAGAA TGGGAGCTGA 421 AGGCGGTGCC CTCTCAACAG CAGGGCATTT GCAAAGAAGA ACCGGCCCAG GAGCCCATCA 481 TGGAGCGGCC CCTCGGCGGG GCGCAGGCGT GGGGGCGCCA GGCAGGTGCT CTGCAGAGGA 541 GTCAGGCTGC GCCCTGGGCG CCCGCACCTG CCATGGCCTG GGACGTCCCT GTAGAGGAAT 601 TCCCCCTCAG GTGTCCCCTC TTCGCCCAGC AACGCGTTCC CGAGGGGGGA CCCTTGCTGG 661 ACACACGCAA GAACGTCCAG GCCACTGAGG GCAGAACCAA GGCCCCCGCG AGACTGTGTG 721 CAGGGGAAAA CGCCTCCACG CCAAGTGAGC CAGAAAAGTT CCCCCAGGTG CGCCGGCAGC 781 GCGGGGCGGG CGCCGGGGAG GGCGAGTTCG TGTGCGGCGA GTGCGGGAAG GCGTTCCGCC 841 AGAGCTCCTC CCTCACGCTG CACCGGCGCT GGCACAGCCG GGAGAAGGCT TACAAGTGCG 901 ATGAATGCGG CAAGGCCTTC ACCTGGAGCA CCAACCTTCT GGAGCACCGG CGCATCCACA 961 CCGGCGAGAA GCCCTTCTTC TGCGGCGAGT GCGGGAAGGC CTTCAGCTGC CACTCGTCCC 1021 TCAACGTGCA CCAGCGCATC CACACGGGCG AGCGGCCCTA CAAGTGCAGC GCCTGCGAGA 1081 AGGCCTTCAG CTGCAGCTCG CTGCTCAGCA TGCACCTGCG GGTGCACACC GGCGAGAAGC 1141 CCTACCGGTG CGGCGAGTGC GGCAAGGCCT TCAACCAGCG TACACACCTC ACACGCCACC 1201 ACCGCATCCA CACGGGCGAG AAGCCCTACC AGTGCGGCTC CTGCGGCAAG GCCTTCACCT 1261 GCCACTCATC CCTCACCGTG CATGAGAAGA TCCACAGCGG GGACAAGCCG TTCAAGTGCA 1321 GCGACTGCGA GAAGGCCTTC AACAGCCGCT CGCGCCTCAC CCTCCACCAG AGGACGCACA 1381 CGGGCGAGAA GCCCTTCAAG TGCGCCGACT GCGGGAAGGG CTTCAGCTGC CACGCGTACC 1441 TGCTCGTGCA CCGGCGCATC CACAGCGGCG AGAAGCCCTT CAAGTGCAAC GAGTGCGGCA 1501 AAGCCTTCAG CTCCCACGCC TACCTCATCG TGCACCGGCG CATCCACACA GGCGAGAAGC 1561 CCTTCGACTG CAGCCAGTGT TGGAAGGCCT TCAGCTGCCA CTCGTCCCTC ATCGTGCACC 1621 AGCGCATCCA CACCGGTGAG AAGCCCTACA AGTGCAGCGA GTGCGGCAGA GCCTTCAGCC 1681 AGAACCACTG TCTCATTAAA CATCAGAAAA TCCACTCCGG GGAGAAGTCG TTTAAGTGTG 1741 AGAAATGTGG GGAGATGTTC AACTGGAGCT CGCACCTCAC TGAGCACCAG AGGCTGCACA 1801 GCGAGGGGAA GCCCTTGGCC ATCCAGTTCA ACAAACACCT GCTCAGCACA TACTACGTGC 1861 CTGGCAGCCT GCTGGGTGCA GGGGATGCTG GACTGAGGGA CGTGGATCCC ATCGACGCGC 1921 TGGATGTGGC AAAGCTCTTG TGCGTGGTTC CCCCCAGAGC TGGCAGGAAT TTCTCCCTGG 1981 GGAGCAAACC TCGAAACTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 2041 gcttatcaat ttgttgcaac gaac