Construct: ORF ccsbBroadEn_07178
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004064.1_s300c1, BRDN0000394412
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF112 (7771)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7771 | ZNF112 | zinc finger protein 112 | NM_001348282.1 | 99.6% | 99.5% | (many diffs) |
| 2 | human | 7771 | ZNF112 | zinc finger protein 112 | NM_001348283.1 | 99.6% | 99.5% | (many diffs) |
| 3 | human | 7771 | ZNF112 | zinc finger protein 112 | NM_013380.4 | 99.6% | 99.5% | (many diffs) |
| 4 | human | 7771 | ZNF112 | zinc finger protein 112 | NM_001083335.2 | 99% | 98.9% | (many diffs) |
| 5 | human | 7771 | ZNF112 | zinc finger protein 112 | NM_001348281.1 | 97.2% | 97% | (many diffs) |
| 6 | human | 7771 | ZNF112 | zinc finger protein 112 | NM_001348284.2 | 92.9% | 92.8% | (many diffs) |
| 7 | human | 7771 | ZNF112 | zinc finger protein 112 | NM_001348285.2 | 92.9% | 92.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2790
- ORF length:
- 2721
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTGACATTC AAGGATGTTG CTGTGGTCTT CACTGAGGAG GAGCTGGGGC 121 TGCTGGACTC TGTCCAGAGG AAGCTGTACC GAGATGTGAT GCTGGAGAAC TTCAGGAACC 181 TGCTCTTAGT AGCACATCAG CCCTTCAAGC CAGACCTAAT ATCCCAGCTG GAGAGAGAAG 241 AAAAGCTTTT GATGGTGGAG ACAGAAACCC CAAGGGATGG ATGTTCAGGA AGGAAGAATC 301 AACAAAAGAT GGAGAGTATT CAGGAAGTAA CAGTAAGCTA CTTTTCCCCC AAAGAGCTTT 361 CCTCCCGTCA GACCTGGCAA CAAAGTGCAG GTGGGTTAAT CAGGTGTCAA GATTTCCTGA 421 AAGTTTTTCA AGGGAAGAAT TCTCAGTTGC AAGAACAAGG TAATTCCCTC GGCCAGGTTT 481 GGGCAGGAAT ACCAGTTCAG ATTTCTGAAG ATAAGAACTA TATATTGACT CATATAGGGA 541 ATGGCTCCAA TTATATAAAA AGTCAAGGGT ATCCATCTTG GAGGGCACAT CATTCTTGGA 601 GGAAAATGTA TCTGAAAGAG TCACATAATT ATCAGTGTAG ATGTCAGCAA ATTTCCATGA 661 AAAATCATTT CTGTAAGTGT GACAGTGTCA GTTGGCTCTC ACATCACAAT GATAAACTGG 721 AAGTACACAG AAAAGAAAAC TACAGCTGCC ATGACTGTGG AGAAGATATC ATGAAGGTAT 781 CATTACTTAA TCAGGAGTCA ATTCAAACAG AGGAGAAGCC CTATCCATGT ACTGGGTATA 841 GAAAAGCCTT CAGTAATGAC TCCAGCTCTG AAGTTCATCA GCAGTTCCAC TTGGAAGGGA 901 AGCCCTATAC ATACAGTTCA TGTGGAAAGG GCTGTAATTA TAGTTCACTT CTTCATATTC 961 ATCAAAATAT TGAGAGAGAA GATGATATTG AGAATTCACA TCTGAAATCC TATCAGAGAG 1021 TGCATACAGA GGAGAAACCA TGCAAATGTG GTGAATATGG TGAGAACTTC AATCACTGTT 1081 CCCCTCTTAA CACTTATGAA CTTATCCACA CAGGTGAGAT GTCCTATAGG CACAACATTT 1141 ATGAGAAAGC CTTCAGTCAT AGCTTAGACC TTAATAGTAT TTTTAGGGTC CATACTAGGG 1201 ATGAACCCCA TGAATATGAG GAAAATGAGA ATGTCTTTAA TCAGAGTTCA TGTCTTCAAG 1261 TCCATCAAAA AATCCACACT GAAGAGAAAC TATACACAGA TATAGAGTAT GGAAAGAGTT 1321 TCATTTGTAG TTCAAATCTT GACATTCAGC ATAGGGTTCA TATGGAAGAG AATTCATATA 1381 ATTCTCAGGA GTGTGGTAAT GGCTTCAGTC TGGCCTCACA TTTTCAGGAC CTTCAGATAG 1441 TCCACACTAA GGAACAACCA TATAAACGCT ATGTGTGTAG TAACAGCTTC AGCCATAATT 1501 TACATCTTCA AGGTCATCCA AAAATTCACA TTGGAGAGAA ACCACGTAAG GAGCATGGGA 1561 ATGGCTTCAA CTGGAGCTCA AAACTTAAAG ATCATCAGAG AGTCCACACT GGACAGAAGC 1621 CATACAAATG CAATATATGC GGCAAAGGTT TCAATCATAG ATCAGTTCTG AATGTTCATC 1681 AGAGAGTCCA CACCGGAGAG AAACCTTATA AATGCGAGGA ATGTGATAAG GGATTCAGTC 1741 GGAGTTCATA TCTTCAAGCC CATCAGAGAG TCCACACTGG AGAAAAACCT TATAAATGTG 1801 AGGAATGTGG GAAGGGGTTC AGTCGAAATT CATACCTTCA AGGCCATCAG AGAGTTCACA 1861 CTGGAGAAAA ACCATACAAG TGTGAGGAGT GTGGGAAGGG CTTCAGTCGG AGTTCACACC 1921 TTCAAGGCCA TCAGAGAGTC CACACTGGAG AAAAACCATT CAAATGTGAG GAATGTGGGA 1981 AGGGGTTCAG TTGGAGCTTT AATCTCCAAA TTCATCAGAG GGTTCACACA GGAGAAAAAC 2041 CCTATAAATG TGAAGAATGT GGTAAAGGCT TCAGTAAGGC CTCAACACTT TTGGCCCATC 2101 AGAGGGTCCA CACGGGGGAG AAGCCATACC AATGTGATGA GTGTGGTAAG AGTTTCAGTC 2161 AGAGATCATA CCTTCAGAGT CATCAGAGTG TCCATTCTGG AGAAAGACCA TATATATGTG 2221 AGGTATGTGG AAAGGGCTTC AGTCAGAGAG CATATCTTCA AGGTCATCAG AGAGTCCACA 2281 CTAGAGTGAA ACCGTATAAA TGTGAGATGT GTGGGAAGGG CTTTAGTCAG AGTTCGCGCC 2341 TTGAAGCACA TCGGAGGGTT CACACAGGAG GGAAACCATA CAAATGTGCG GTGTGTACAA 2401 AGGGTTTCAG TGAGAGTTCA CGCCTTCAAG CACACCAAAG GGTTCATGTG GAAGGGAGAC 2461 CCTATAAATG TGAACAGTGT GGTAAGGGTT TCAGTGGGTA TTCAAGTCTT CAAGCCCATC 2521 ACAGAGTCCA CACAGGAGAG AAACCATACA AATGTGAGGT ATGTGGAAAG GGCTTCAGTC 2581 AGAGATCAAA TCTTCAGGCT CACCAGAGAG TCCACACAGG AGAGAAACCA TACAAATGTG 2641 ATGCATGTGG TAAGGGTTTC CGTTGGAGCT CAGGTCTTCT CATTCATCAA AGAGTCCATA 2701 GTAGTGATAA ATTCTATAAA AGCGAAGACT ATGGTAAGGA CTACCCTTCA TCAGAGAATC 2761 TACACAGAAA TGAAGATTCT GTTTTGTTTT TGCCAACTTT CTTGTACAAA GTtggcatta 2821 taagaaagca ttgcttatca atttgttgca acgaac