Construct: ORF ccsbBroadEn_07204

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015127.1_s300c1, BRDN0000456647
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TAF15 (8148)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8148 TAF15 TATA-box binding protein as... NM_139215.3 99.9% 100% 1524C>T
2 human 8148 TAF15 TATA-box binding protein as... NM_003487.4 99.4% 99.4% 175_176insGTCAGTCAG;1515C>T
3 human 8148 TAF15 TATA-box binding protein as... XM_024450959.1 54.5% 54.5% 0_1ins807;717C>T
4 mouse 70439 Taf15 TATA-box binding protein as... NM_027427.2 87.3% 89.8% (many diffs)
5 mouse 70439 Taf15 TATA-box binding protein as... XM_006534185.3 74.3% 63% (many diffs)
6 mouse 70439 Taf15 TATA-box binding protein as... XM_006534187.3 68.7% 57.8% (many diffs)
7 mouse 70439 Taf15 TATA-box binding protein as... XM_011249252.2 45.1% 47.8% (many diffs)
8 mouse 70439 Taf15 TATA-box binding protein as... XM_017314756.1 45.1% 47.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1845
ORF length:
1776
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCGGATTCT GGAAGTTACG GTCAGTCTGG GGGTGAGCAG CAAAGTTATT
121CTACCTATGG AAATCCAGGC AGCCAAGGCT ATGGACAAGC ATCACAAAGC TATTCTGGCT
181ATGGGCAAAC GACTGATTCC TCTTATGGAC AGAACTACAG CGGTTACTCC AGTTATGGAC
241AAAGTCAGTC AGGTTATTCA CAGTCCTATG GTGGTTATGA GAATCAAAAG CAGAGCTCAT
301ATAGCCAGCA ACCATATAAT AACCAGGGAC AGCAGCAAAA CATGGAATCA TCAGGAAGCC
361AAGGTGGAAG AGCACCTTCC TATGACCAGC CAGACTATGG TCAACAAGAT TCATATGACC
421AGCAGTCAGG CTATGATCAA CATCAAGGCT CATATGATGA GCAGTCAAAT TATGATCAGC
481AGCATGATTC CTATAGTCAA AACCAGCAGT CCTATCATTC ACAAAGGGAA AACTACAGCC
541ACCACACACA AGATGACCGT CGTGATGTGA GTAGGTATGG AGAAGATAAT AGAGGATATG
601GCGGGTCACA GGGAGGAGGT AGAGGGCGTG GGGGATATGA CAAGGATGGA AGAGGTCCTA
661TGACAGGATC AAGTGGTGGT GACCGCGGTG GCTTCAAAAA TTTTGGTGGT CACAGGGATT
721ATGGACCCAG AACAGATGCT GATTCAGAAT CTGATAATTC AGATAACAAC ACAATCTTTG
781TGCAAGGACT TGGGGAGGGT GTGTCTACAG ATCAAGTTGG GGAGTTCTTT AAACAAATAG
841GAATTATCAA GACAAATAAG AAGACCGGAA AACCAATGAT AAATCTTTAT ACAGACAAGG
901ACACAGGAAA GCCAAAGGGG GAGGCAACAG TGTCATTTGA TGACCCTCCT TCAGCTAAGG
961CAGCCATTGA CTGGTTTGAT GGAAAAGAAT TCCATGGCAA CATCATTAAA GTGTCCTTTG
1021CCACTAGAAG ACCTGAATTC ATGAGAGGAG GTGGAAGTGG AGGTGGGCGG CGAGGCCGTG
1081GAGGATATAG AGGTCGTGGA GGCTTTCAAG GGAGAGGTGG AGACCCCAAA AGTGGGGATT
1141GGGTTTGCCC TAATCCGTCA TGCGGAAATA TGAACTTTGC TCGAAGGAAT TCCTGCAATC
1201AGTGCAATGA GCCTAGACCA GAGGACTCTC GTCCCTCAGG AGGAGATTTC CGGGGGAGAG
1261GCTACGGTGG AGAGAGGGGC TACAGAGGTC GTGGGGGCAG AGGTGGAGAC CGAGGCGGCT
1321ATGGTGGAGA CAGAAGTGGG GGTGGCTATG GTGGAGACAG AAGCAGCGGT GGTGGCTACA
1381GCGGAGATAG AAGTGGGGGC GGCTATGGTG GAGACAGAAG TGGGGGTGGC TATGGTGGGG
1441ACAGAGGCGG CGGCTATGGT GGGGACAGAG GAGGCGGCTA TGGAGGAGAC CGAGGAGGTG
1501GCTATGGAGG AGATCGAGGT GGCTATGGAG GAGACCGAGG TGGAGGCTAT GGTGGAGACC
1561GAGGAGGCTA TGGAGGAGAT CGAGGAGGTT ATGGAGGAGA TCGAGGAGGT TATGGAGGAG
1621ATCGAGGAGG CTATGGAGGA GACAGAAGCC GGGGGGGCTA TGGAGGAGAC CGTGGTGGTG
1681GCAGTGGCTA CGGTGGAGAC CGAAGTGGAG GCTATGGAGG AGACAGGAGT GGTGGCGGCT
1741ATGGAGGAGA CCGAGGTGGG GGCTACGGAG GAGACCGAGG TGGCTATGGA GGCAAAATGG
1801GAGGAAGAAA CGACTACAGA AATGATCAGC GCAACCGACC ATACTTGCCA ACTTTCTTGT
1861ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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