Construct: ORF ccsbBroadEn_07209
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006093.1_s300c1, BRDN0000394829
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AKAP17A (8227)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8227 | AKAP17A | A-kinase anchoring protein 17A | NM_005088.3 | 99.8% | 99.8% | 666C>T;1498C>G;1923G>A |
| 2 | human | 8227 | AKAP17A | A-kinase anchoring protein 17A | NR_027383.2 | 63.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2154
- ORF length:
- 2085
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCAGCGGCT ACCATCGTGC ACGACACGTC TGAGGCCGTG GAGCTCTGCC 121 CTGCTTACGG CTTGTACCTG AAGCCCATCA CCAAGATGAC CATCAGCGTG GCACTCCCGC 181 AGCTGAAGCA GCCGGGGAAG TCCATCTCCA ACTGGGAGGT GATGGAGAGG CTGAAGGGCA 241 TGGTGCAGAA CCACCAGTTC TCCACGCTGC GTATTTCCAA GAGCACCATG GACTTCATCC 301 GCTTCGAGGG GGAGGTGGAG AACAAGAGCC TGGTCAAGTC TTTTCTGGCC TGCCTGGACG 361 GCAAGACCAT CAAGCTCAGC GGCTTCTCCG ACATCCTGAA GGTGCGCGCG GCCGAGTTCA 421 AGATCGACTT CCCCACCCGC CACGACTGGG ACTCCTTCTT CCGCGACGCC AAGGACATGA 481 ACGAGACCCT GCCGGGGGAG CGGCCGGACA CCATCCACCT GGAGGGGCTG CCCTGCAAGT 541 GGTTCGCCCT GAAGGAGTCG GGCTCCGAGA AGCCCAGCGA GGACGTCCTG GTCAAGGTGT 601 TTGAGAAGTT CGGGGAGATC CGGAATGTGG ACATCCCCAT GCTGGACCCC TACCGGGAGG 661 AGATGACGGG CCGCAACTTC CACACCTTCA GTTTCGGGGG GCACTTGAAC TTCGAGGCCT 721 ATGTGCAGTA CCGTGAGTAC ATGGGCTTCA TCCAGGCCAT GAGCGCCCTG CGCGGGATGA 781 AACTCATGTA CAAGGGCGAG GACGGCAAGG CCGTGGCCTG CAACATCAAG GTTTCTTTTG 841 ATTCGACCAA ACACCTGAGT GATGCCTCAA TTAAGAAGCG GCAGCTGGAG AGGCAGAAGC 901 TTCAGGAACT GGAGCAGCAA AGAGAAGAAC AAAAGCGCAG AGAGAAGGAA GCGGAGGAGA 961 GGCAGCGAGC GGAGGAAAGG AAACAAAAGG AGCTGGAAGA GCTGGAGCGA GAGAGGAAAA 1021 GAGAAGAGAA GCTTCGCAAG AGGGAGCAGA AGCAGAGGGA CCGTGAGCTG CGCCGGAATC 1081 AGAAGAAGCT GGAGAAGCTG CAGGCGGAGG AGCAGAAGCA GCTGCAGGAG AAGATCAAGC 1141 TGGAGGAGCG CAAGCTGCTG CTGGCCCAGA GGAACCTGCA GTCCATCCGG CTCATCGCCG 1201 AGCTGCTCAG CAGAGCCAAG GCTGTGAAGC TACGGGAACA GGAGCAGAAG GAGGAGAAGC 1261 TGAGGCTCCA GCAGCAGGAG GAGCGGCGGC GGCTGCAGGA GGCCGAGCTG CGGCGCGTGG 1321 AGGAGGAGAA GGAGCGCGCG CTGGGCCTGC AGCGGAAAGA GCGGGAGCTG CGCGAGCGGC 1381 TGCTGAGCAT CCTGCTGAGC AAGAAGCCGG ACGACAGCCA CACACACGAC GAGCTGGGCG 1441 TGGCACACGC CGACCTGCTG CAGCCCGTCC TGGACATCCT GCAGACCGTG TCGTCCGGCT 1501 GTGTGAGCGC CACCACGCTG CACCCCCTCG GGGGCCAGCC CCCGGCCGGT GCCCCCAAGG 1561 AGAGCGCGGC CCACCCAGAG GCCGACGGCG CTCCCAAAAG CGTGAACGGG AGCGTGGCCG 1621 AGGAGGCCCC ATGCAAGGAG GTTCAGAGCT CCTGTCGTGT GGTCCCCGAG GATGGCTCTC 1681 CAGAGAAGAG GTGCCCGGGC GGCGTCCTCT CCTGCATTCC TGACAACAAC CAACAGCCCA 1741 AGGGCATCCC TGCCTGCGAG CAGAATGTCT CCAGAAAGGA CACCCGGTCA GAACAGGACA 1801 AGTGCAACCG GGAGCCCAGC AAGGGCCGGG GCCGGGCCAC CGGAGACGGG CTTGCTGACC 1861 GGCACAAGCG GGAGAGGAGC CGGGCCAGGC GGGCCAGCAG CAGGGAGGAC GGGAGGCCAC 1921 GCAAGGAGCG GCGGCCCCAC AAGAAGCACG CCTACAAGGA TGACAGCCCC CGCCGGCGCA 1981 GCACGAGCCC AGACCACACC CGGTCCCGGA GGTCCCACAG CAAAGACAGG CACCGGAGGG 2041 AGCGGAGCCG GGAGCGGAGG GGCAGCGCCA GCAGGAAGCA CAGCCGCCAC CGCCGCCGAA 2101 GCGAGCGGTC GCGCTCCCGG TCCCCGAGCA GGCACCGCAG TACCTGGAAC AGGTTGCCAA 2161 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac