Construct: ORF ccsbBroadEn_07325
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002913.1_s300c1, BRDN0000397267
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TAX1BP1 (8887)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8887 | TAX1BP1 | Tax1 binding protein 1 | NM_006024.6 | 99.9% | 99.7% | 919T>A;1175A>G |
| 2 | human | 8887 | TAX1BP1 | Tax1 binding protein 1 | NM_001362794.1 | 98.6% | 98.4% | 919T>A;1175A>G;1905_1906ins30 |
| 3 | human | 8887 | TAX1BP1 | Tax1 binding protein 1 | NM_001079864.2 | 94.5% | 94.4% | 919T>A;1175A>G;1808_1809ins126 |
| 4 | human | 8887 | TAX1BP1 | Tax1 binding protein 1 | NM_001206901.1 | 94.5% | 94.4% | 919T>A;1175A>G;1808_1809ins126 |
| 5 | human | 8887 | TAX1BP1 | Tax1 binding protein 1 | NM_001362795.1 | 86.3% | 86.1% | 919T>A;1175A>G;1761_1762ins321 |
| 6 | human | 8887 | TAX1BP1 | Tax1 binding protein 1 | NM_001206902.1 | 74.6% | 74.5% | (many diffs) |
| 7 | mouse | 52440 | Tax1bp1 | Tax1 (human T cell leukemia... | NM_025816.3 | 83.8% | 84.1% | (many diffs) |
| 8 | mouse | 52440 | Tax1bp1 | Tax1 (human T cell leukemia... | XM_006506369.3 | 83.8% | 84.1% | (many diffs) |
| 9 | mouse | 52440 | Tax1bp1 | Tax1 (human T cell leukemia... | XM_006506370.3 | 78.4% | 78.5% | (many diffs) |
| 10 | mouse | 52440 | Tax1bp1 | Tax1 (human T cell leukemia... | XM_006506371.3 | 77.1% | 78% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2433
- ORF length:
- 2367
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC ATCCTTTCAA GAAGTCCCAT TGCAGACTTC CAACTTTGCC CATGTCATCT 121 TTCAAAATGT GGCCAAGAGT TACCTTCCTA ATGCACACCT GGAATGTCAT TACACCTTAA 181 CTCCATATAT TCATCCACAT CCAAAAGATT GGGTTGGTAT ATTCAAGGTT GGATGGAGTA 241 CTGCTCGTGA TTATTACACG TTTTTATGGT CCCCTATGCC TGAACATTAT GTGGAAGGAT 301 CAACAGTCAA TTGTGTACTA GCATTCCAAG GATATTACCT TCCAAATGAT GATGGAGAAT 361 TTTATCAGTT CTGTTACGTT ACCCATAAGG GTGAAATTCG TGGAGCAAGT ACACCTTTCC 421 AGTTTCGAGC TTCTTCTCCA GTTGAAGAGC TGCTTACTAT GGAAGATGAA GGAAATTCTG 481 ACATGTTAGT GGTGACCACA AAAGCAGGCC TTCTTGAGTT GAAAATTGAG AAAACCATGA 541 AAGAAAAAGA AGAACTGTTA AAGTTAATTG CCGTTCTGGA AAAAGAAACA GCACAACTTC 601 GAGAACAAGT TGGGAGAATG GAAAGAGAAC TTAACCATGA GAAAGAAAGA TGTGACCAAC 661 TGCAAGCAGA ACAAAAGGGT CTTACTGAAG TAACACAAAG CTTAAAAATG GAAAATGAAG 721 AGTTTAAGAA GAGGTTCAGT GATGCTACAT CCAAAGCCCA TCAGCTTGAG GAAGATATTG 781 TGTCAGTAAC ACATAAAGCA ATTGAAAAAG AAACCGAATT AGACAGTTTA AAGGACAAAC 841 TCAAGAAGGC ACAACATGAA AGAGAACAAC TTGAATGTCA GTTGAAGACA GAGAAGGATG 901 AAAAGGAACT TTATAAGGTA CATTTGAAGA ATACAGAAAT AGAAAATACC AAGCTTATGT 961 CAGAGGTCCA GACTTTAAAA AATATAGATG GGAACAAAGA AAGCGTGATT ACTCATTTCA 1021 AAGAAGAGAT TGGCAGGCTG CAGTTATGTT TGGCTGAAAA GGAAAATCTG CAAAGAACTT 1081 TCCTGCTTAC AACCTCAAGT AAAGAAGATA CTTGTTTTTT AAAGGAGCAA CTTCGTAAAG 1141 CAGAGGAACA GGTTCAGGCA ACTCGGCAAG AAGTTGTCTT TCTGGCTAAA GAACTCAGTG 1201 ATGCTGTCAA CGTACGAGAC AGAACGATGG CAGACCTGCG TACTGCACGC TTGGAAAACG 1261 AGAAAGTGAA AAAGCAGTTA GCTGATGCAG TGGCAGAACT TAAACTAAAT GCTATGAAAA 1321 AAGATCAGGA CAAGACTGAT ACACTGGAAC ACGAACTAAG AAGAGAAGTT GAAGATCTGA 1381 AACTCCGTCT TCAGATGGCT GCAGACCATT ATAAAGAAAA ATTTAAGGAA TGCCAAAGGC 1441 TCCAAAAACA AATAAACAAA CTTTCAGATC AATCAGCTAA TAATAATAAT GTCTTCACAA 1501 AGAAAACGGG GAATCAGCAG AAAGTGAATG ATGCTTCAGT AAACACAGAC CCAGCCACTT 1561 CTGCCTCTAC TGTAGATGTA AAGCCATCAC CTTCTGCAGC AGAGGCAGAT TTTGACATAG 1621 TAACAAAGGG GCAAGTCTGT GAAATGACCA AAGAAATTGC TGACAAAACA GAAAAGTATA 1681 ATAAATGTAA ACAACTCTTG CAGGATGAGA AAGCAAAATG CAATAAATAT GCTGATGAAC 1741 TTGCAAAAAT GGAGCTGAAA TGGAAAGAAC AAGTGAAAAT TGCTGAAAAT GTAAAACTTG 1801 AACTAGCTGA AGTACAGGAC AATTATAAAG AACTTAAAAG GAGTCTAGAA AATCCAGCAG 1861 AAAGGAAAAT GGAAGGTCAG AATTCCCAGA GTCCTCAATG TTTCAAAACA TGCTCAGAGC 1921 AAAATGGTTA TGTTCTCACA TTGTCAAATG CACAACCAGT TCTGCAATAT GGTAATCCTT 1981 ATGCATCTCA GGAAACAAGA GATGGAGCAG ATGGTGCTTT TTACCCAGAT GAAATACAAA 2041 GGCCACCTGT CAGAGTCCCC TCTTGGGGAC TGGAAGACAA TGTTGTCTGC AGCCAGCCTG 2101 CTCGAAACTT TAGTCGGCCT GATGGCTTAG AGGACTCTGA GGATAGCAAA GAAGATGAGA 2161 ATGTGCCTAC TGCTCCTGAT CCTCCAAGTC AACATTTACG TGGGCATGGG ACAGGCTTTT 2221 GCTTTGATTC CAGCTTTGAT GTTCACAAGA AGTGTCCCCT CTGTGAGTTA ATGTTTCCTC 2281 CTAACTATGA TCAGAGCAAA TTTGAAGAAC ATGTTGAAAG TCACTGGAAG GTGTGCCCGA 2341 TGTGCAGCGA GCAGTTCCCT CCTGACTATG ACCAGCAGGT GTTTGAAAGG CATGTGCAGA 2401 CCCATTTTGA TCAGAATGTT CTAAATTTTG ACTACCCAAC TTTCTTGTAC AAAGTtggca 2461 ttataagaaa gcattgctta tcaatttgtt gcaacgaac