Construct: ORF ccsbBroadEn_07337
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009569.1_s300c1, BRDN0000391095
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TAF1B (9014)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9014 | TAF1B | TATA-box binding protein as... | NM_005680.3 | 99.6% | 99.3% | (many diffs) |
| 2 | human | 9014 | TAF1B | TATA-box binding protein as... | XM_011510410.2 | 99.2% | 98.6% | (many diffs) |
| 3 | human | 9014 | TAF1B | TATA-box binding protein as... | XM_011510411.1 | 64.3% | 64.1% | (many diffs) |
| 4 | human | 9014 | TAF1B | TATA-box binding protein as... | NM_001318976.1 | 56.4% | 56.2% | (many diffs) |
| 5 | human | 9014 | TAF1B | TATA-box binding protein as... | NM_001318977.1 | 56.4% | 56.2% | (many diffs) |
| 6 | human | 9014 | TAF1B | TATA-box binding protein as... | XM_024453209.1 | 56.3% | 56.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1830
- ORF length:
- 1764
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CCTCGAGGAG TCGGAAGAGT TTAAAGAACG CTGTACTCAG TGTGCTGCTG 121 TCTCATGGGG TCTTACTGAT GAAGGCAAAT ATTATTGCAC TTCTTGCCAC AATGTTACAG 181 AGAGATATCA GGAAGTTACA AACACTGATC TTATTCCTAA TACCCAAATA AAAGCCCTCA 241 ACCGGGGGCT TAAAAAAAAA AACAATACTG AAAAAGGCTG GGATTGGTAT GTGTGTGAAG 301 GTTTCCAGTA TATTCTTTAT CAACAAGCAG AAGCCTTAAA GAACCTTGGA GTAGGCCCAG 361 AGTTAAAGAA CGATGTTTTA CATAATTTTT GGAAGCGCTA CCTTCAGAAG AGCAAGCAGG 421 CATATTGTAA GAACCCAGTT TATACCACTG GAAGGAAACC TACGGTATTA GAAGATAATC 481 TAAGTCATTC AGACTGGGCT AGTGAGCCTG AGCTGCTAAG TGATGTCAGC TGTCCTCCTT 541 TTCTTGAAAG TGGAGCGGAG TCTCAGTCTG ACATCCACAC TCGAAAACCT TTCCCCGTCA 601 GCAAAGCATC ACAATCAGAA ACGTCTGTCT GCTCTGGATC TCTGGATGGA GTTGAATACT 661 CACAACGAAA GGAGAAGGGA ATCGTGAAGA TGACCATGCC ACAGACACTT GCCTTCTGTT 721 ATCTGTCCTT ACTTTGGCAG AGAGAAGCAA TAACACTTTC AGATCTTTTG AGGTTTGTTG 781 AAGAGGACCA TATTCCTTAC ATAAATGCTT TTCAGCATTT TCCAGAACAG ATGAAATTAT 841 ATGGACGTGA CAGAGGAATC TTTGGTATAG AGTCTTGGCC TGACTACGAG GACATCTATA 901 AAAAAACAAT AGAAGTTGGA ACATTTTTAG ATTTGCCTCG TTTTCCAGAC ATAACTGAAG 961 ACTGCTATCT TCATCCCAAC ATACTGTGTA TGAAATACTT GATGGAAGTC AACCTCCCTG 1021 ATGAAATGCA TAGCTTAACT TGCCACGTGG TAAAAATGAC TGGAATGGGA GAAGTGGATT 1081 TTCTGACATT TGATCCTATA GCCAAAATGG CAAAAGCTGT TAAGTACGAT GTACAAGCTG 1141 TAGCTATCAT TGTGGTGGTA TTGAAACTGC TCTTTCTATT GGATGACAGT TTCGAGTGGT 1201 CTTTGTCTAA TCTTGCTGAA AAGCATAATG AAAAGAACAA AAAAGATAAG CCATGGTTTG 1261 ATTTCAGAAA GTGGTACCAA ATTATGAAGA AAGCTTTTGA TGAGAAAAAA CAAAAATGGG 1321 AAGAAGCAAG GGCCAAGTAC CTGTGGAAAA GTGAAAAGCC ACTCTACTAC TCATTTGTCG 1381 ACAAACCAGT AGCATATAAA AAAAGAGAAA TGGTGGTGAA TCTACAGAAA CAATTTAGCA 1441 CACTGGTCGA TTCAACAGCA ACTGCTGGAA AAAAAAGCCC TTCAAGTTTT CAGTTCAACT 1501 GGACTGAAGA GGACACTGAT AGAACGTGTT TCCATGGACA CAGCCTTCAG GGAGTCCTGA 1561 AAGAGAAAGG CCAATCACTG CTGACTAAGA ATTCATTATA TTGGCTTAGT ACACAGAAAT 1621 TCTGCAGATG CTATTGTACA CATGTGACAA CCTATGAAGA ATCAAATTAT TCTCTGAGTT 1681 ATCAGTTTAT ACTAAATCTC TTCTCCTTCC TGCTCAGAAT AAAGACTTCC CTTCTCCATG 1741 AAGAAGTGAG CTTAGTTGAG AAGAAACTTT TTGAGAAAAA ATACAGTGTA AAAAGAAAGA 1801 AATCAAGATC CAAGAAAGTG AGACGACATT GCCCAACTTT CTTGTACAAA GTtggcatta 1861 taagaaagca ttgcttatca atttgttgca acgaac