Construct: ORF ccsbBroadEn_07337

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009569.1_s300c1, BRDN0000391095
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TAF1B (9014)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9014 TAF1B TATA-box binding protein as... NM_005680.3 99.6% 99.3% (many diffs)
2 human 9014 TAF1B TATA-box binding protein as... XM_011510410.2 99.2% 98.6% (many diffs)
3 human 9014 TAF1B TATA-box binding protein as... XM_011510411.1 64.3% 64.1% (many diffs)
4 human 9014 TAF1B TATA-box binding protein as... NM_001318976.1 56.4% 56.2% (many diffs)
5 human 9014 TAF1B TATA-box binding protein as... NM_001318977.1 56.4% 56.2% (many diffs)
6 human 9014 TAF1B TATA-box binding protein as... XM_024453209.1 56.3% 56.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1830
ORF length:
1764
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CCTCGAGGAG TCGGAAGAGT TTAAAGAACG CTGTACTCAG TGTGCTGCTG
121TCTCATGGGG TCTTACTGAT GAAGGCAAAT ATTATTGCAC TTCTTGCCAC AATGTTACAG
181AGAGATATCA GGAAGTTACA AACACTGATC TTATTCCTAA TACCCAAATA AAAGCCCTCA
241ACCGGGGGCT TAAAAAAAAA AACAATACTG AAAAAGGCTG GGATTGGTAT GTGTGTGAAG
301GTTTCCAGTA TATTCTTTAT CAACAAGCAG AAGCCTTAAA GAACCTTGGA GTAGGCCCAG
361AGTTAAAGAA CGATGTTTTA CATAATTTTT GGAAGCGCTA CCTTCAGAAG AGCAAGCAGG
421CATATTGTAA GAACCCAGTT TATACCACTG GAAGGAAACC TACGGTATTA GAAGATAATC
481TAAGTCATTC AGACTGGGCT AGTGAGCCTG AGCTGCTAAG TGATGTCAGC TGTCCTCCTT
541TTCTTGAAAG TGGAGCGGAG TCTCAGTCTG ACATCCACAC TCGAAAACCT TTCCCCGTCA
601GCAAAGCATC ACAATCAGAA ACGTCTGTCT GCTCTGGATC TCTGGATGGA GTTGAATACT
661CACAACGAAA GGAGAAGGGA ATCGTGAAGA TGACCATGCC ACAGACACTT GCCTTCTGTT
721ATCTGTCCTT ACTTTGGCAG AGAGAAGCAA TAACACTTTC AGATCTTTTG AGGTTTGTTG
781AAGAGGACCA TATTCCTTAC ATAAATGCTT TTCAGCATTT TCCAGAACAG ATGAAATTAT
841ATGGACGTGA CAGAGGAATC TTTGGTATAG AGTCTTGGCC TGACTACGAG GACATCTATA
901AAAAAACAAT AGAAGTTGGA ACATTTTTAG ATTTGCCTCG TTTTCCAGAC ATAACTGAAG
961ACTGCTATCT TCATCCCAAC ATACTGTGTA TGAAATACTT GATGGAAGTC AACCTCCCTG
1021ATGAAATGCA TAGCTTAACT TGCCACGTGG TAAAAATGAC TGGAATGGGA GAAGTGGATT
1081TTCTGACATT TGATCCTATA GCCAAAATGG CAAAAGCTGT TAAGTACGAT GTACAAGCTG
1141TAGCTATCAT TGTGGTGGTA TTGAAACTGC TCTTTCTATT GGATGACAGT TTCGAGTGGT
1201CTTTGTCTAA TCTTGCTGAA AAGCATAATG AAAAGAACAA AAAAGATAAG CCATGGTTTG
1261ATTTCAGAAA GTGGTACCAA ATTATGAAGA AAGCTTTTGA TGAGAAAAAA CAAAAATGGG
1321AAGAAGCAAG GGCCAAGTAC CTGTGGAAAA GTGAAAAGCC ACTCTACTAC TCATTTGTCG
1381ACAAACCAGT AGCATATAAA AAAAGAGAAA TGGTGGTGAA TCTACAGAAA CAATTTAGCA
1441CACTGGTCGA TTCAACAGCA ACTGCTGGAA AAAAAAGCCC TTCAAGTTTT CAGTTCAACT
1501GGACTGAAGA GGACACTGAT AGAACGTGTT TCCATGGACA CAGCCTTCAG GGAGTCCTGA
1561AAGAGAAAGG CCAATCACTG CTGACTAAGA ATTCATTATA TTGGCTTAGT ACACAGAAAT
1621TCTGCAGATG CTATTGTACA CATGTGACAA CCTATGAAGA ATCAAATTAT TCTCTGAGTT
1681ATCAGTTTAT ACTAAATCTC TTCTCCTTCC TGCTCAGAAT AAAGACTTCC CTTCTCCATG
1741AAGAAGTGAG CTTAGTTGAG AAGAAACTTT TTGAGAAAAA ATACAGTGTA AAAAGAAAGA
1801AATCAAGATC CAAGAAAGTG AGACGACATT GCCCAACTTT CTTGTACAAA GTtggcatta
1861taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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