Construct: ORF ccsbBroadEn_07364
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003134.1_s300c1, BRDN0000457242
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RABEP1 (9135)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9135 | RABEP1 | rabaptin, RAB GTPase bindin... | NM_004703.6 | 99.8% | 100% | (many diffs) |
| 2 | human | 9135 | RABEP1 | rabaptin, RAB GTPase bindin... | XM_011524060.2 | 97.3% | 97.5% | (many diffs) |
| 3 | human | 9135 | RABEP1 | rabaptin, RAB GTPase bindin... | NM_001083585.3 | 96% | 96.1% | (many diffs) |
| 4 | human | 9135 | RABEP1 | rabaptin, RAB GTPase bindin... | NM_001291581.2 | 94.8% | 95% | (many diffs) |
| 5 | human | 9135 | RABEP1 | rabaptin, RAB GTPase bindin... | XM_017025295.2 | 63.8% | 63.1% | (many diffs) |
| 6 | human | 9135 | RABEP1 | rabaptin, RAB GTPase bindin... | XM_017025294.2 | 62.2% | 61.5% | (many diffs) |
| 7 | human | 9135 | RABEP1 | rabaptin, RAB GTPase bindin... | NM_001291582.2 | 21.3% | 20.8% | (many diffs) |
| 8 | mouse | 54189 | Rabep1 | rabaptin, RAB GTPase bindin... | NM_019400.3 | 90.6% | 96.2% | (many diffs) |
| 9 | mouse | 54189 | Rabep1 | rabaptin, RAB GTPase bindin... | XM_006533750.3 | 86.7% | 92.2% | (many diffs) |
| 10 | mouse | 54189 | Rabep1 | rabaptin, RAB GTPase bindin... | NM_001291142.1 | 86.4% | 91.6% | (many diffs) |
| 11 | mouse | 54189 | Rabep1 | rabaptin, RAB GTPase bindin... | NM_001291141.1 | 85.8% | 91.2% | (many diffs) |
| 12 | mouse | 54189 | Rabep1 | rabaptin, RAB GTPase bindin... | NM_001291143.1 | 81.4% | 86.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2652
- ORF length:
- 2586
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GCAGCCGGGC CCGGCTTCCC AGCCTGACGT TTCTCTTCAG CAACGGGTAG 121 CAGAATTGGA AAAAATTAAT GCAGAATTTT TACGTGCACA ACAGCAGCTT GAACAAGAAT 181 TTAATCAAAA GAGAGCAAAA TTTAAGGAGT TATATTTGGC TAAAGAGGAG GATCTGAAGA 241 GGCAAAATGC AGTATTACAA GCTGCACAAG ATGATTTGGG ACACCTTCGA ACCCAGCTGT 301 GGGAAGCTCA AGCAGAGATG GAGAATATTA AGGCGATTGC CACAGTCTCT GAGAACACCA 361 AGCAAGAAGC TATAGATGAA GTGAAAAGAC AGTGGAGAGA AGAAGTTGCT TCACTTCAGG 421 CTGTTATGAA AGAAACAGTT CGTGACTATG AGCACCAGTT CCACCTTAGG CTGGAGCAGG 481 AGCGAACACA GTGGGCACAG TATAGAGAAT CCGCAGAGAG GGAAATAGCT GATTTAAGAA 541 GAAGGCTGTC TGAAGGTCAA GAGGAGGAAA ATTTAGAAAA TGAAATGAAA AAGGCCCAAG 601 AGGATGCTGA GAAACTTCGG TCCGTTGTGA TGCCAATGGA AAAGGAAATT GCAGCTTTGA 661 AGGATAAACT GACAGAGGCT GAAGACAAAA TTAAAGAGCT GGAGGCCTCA AAGGTTAAAG 721 AACTGAATCA TTATCTGGAA GCTGAGAAAT CTTGTAGGAC TGATCTAGAG ATGTATGTAG 781 CTGTTTTGAA TACTCAGAAA TCTGTTCTAC AGGAAGATGC TGAGAAACTG CGGAAAGAAT 841 TGCATGAAGT TTGCCATCTC TTGGAGCAAG AGCGACAACA ACACAACCAG TTAAAACATA 901 CGTGGCAGAA GGCCAATGAC CAGTTTCTGG AATCTCAGCG TTTACTGATG AGAGACATGC 961 AGCGAATGGA GATTGTGCTA ACTTCAGAAC AGCTCCGACA AGTTGAAGAA CTGAAGAAGA 1021 AAGATCAGGA GGATGATGAA CAACAAAGAC TCAATAAGAG AAAGGATCAC AAAAAAGCAG 1081 ATGTTGAGGA AGAAATAAAA ATACCAGTAG TGTGTGCTTT AACTCAAGAA GAATCTTCAG 1141 CCCAGTTATC AAATGAAGAG GAGCATTTAG ACAGCACCCG TGGCTCAGTT CATTCCTTAG 1201 ATGCAGGCTT GCTGTTGCCA TCTGGAGATC CTTTCAGTAA ATCGGACAAT GACATGTTTA 1261 AAGATGGACT CAGGAGAGCA CAGTCTACAG ACAGCTTGGG AACCTCGGGC TCATTGCAAT 1321 CCAAAGCTTT AGGCTATAAC TACAAAGCAA AATCTGCTGG AAACCTGGAC GAGTCAGATT 1381 TTGGACCACT GGTAGGAGCA GATTCAGTGT CTGAGAACTT TGATACTGCA TCCCTTGGGT 1441 CACTCCAGAT GCCAAGTGGG TTTATGTTAA CCAAAGATCA GGAAAGAGCA ATCAAGGCGA 1501 TGACACCAGA ACAAGAAGAG ACAGCGTCCC TCCTCTCCAG CGTTACCCAG GGCATGGAGA 1561 GTGCCTATGT GTCCCCTAGT GGTTATCGTT TAGTTAGTGA AACAGAATGG AATCTCTTGC 1621 AGAAAGAGGT ACATAATGCT GGAAATAAAC TTGGTAGACG TTGTGATATG TGTTCCAATT 1681 ACGAAAAACA GTTACAAGGA ATTCAGATTC AGGAGGCTGA AACGAGAGAC CAGGTGAAAA 1741 AACTACAGCT GATGCTAAGG CAAGCTAATG ACCAGTTAGA GAAGACAATG AAAGATAAGC 1801 AGGAGCTGGA AGACTTCATA AAGCAAAGCA GCGAAGATTC GAGTCACCAG ATCTCTGCAC 1861 TCGTCCTAAG AGCCCAGGCC TCCGAGATCT TACTTGAAGA GTTACAGCAG GGGCTTTCCC 1921 AGGCAAAGAG GGATGTTCAG GAACAGATGG CGGTGCTGAT GCAGTCACGG GAACAGGTTT 1981 CAGAAGAGCT GGTGAGGTTA CAGAAAGATA ATGACAGTCT CCAGGGAAAG CACAGCCTGC 2041 ATGTGTCATT ACAGCAAGCA GAAGACTTCA TCCTCCCAGA CACTACAGAG GCACTGCGGG 2101 AGTTGGTATT AAAATACCGC GAGGACATCA TTAATGTGCG GACAGCAGCA GACCACGTAG 2161 AAGAAAAGCT GAAGGCTGAG ATACTTTTCC TAAAAGAGCA GATCCAAGCA GAACAGTGTT 2221 TAAAAGAAAA TCTTGAAGAA ACTCTGCAAC TAGAAATAGA AAACTGCAAG GAGGAAATAG 2281 CTTCTATTTC TAGCCTAAAA GCTGAATTAG AAAGAATAAA AGTGGAAAAA GGACAGTTGG 2341 AGTCCACATT AAGAGAGAAG TCTCAACAGC TTGAGAGTCT TCAGGAAATA AAGATCAGTT 2401 TGGAAGAGCA GTTAAAGAAA GAGACTGCTG CTAAGGCTAC CGTTGAACAG CTAATGTTTG 2461 AAGAGAAGAA CAAAGCTCAG AGATTACAGA CAGAATTAGA TGTCAGTGAG CAAGTCCAGA 2521 GAGATTTTGT AAAGCTTTCA CAGACCCTTC AGGTGCAGTT AGAGCGGATC CGGCAAGCTG 2581 ACTCCTTGGA GAGAATCCGG GCAATTCTGA ATGATACTAA ACTGACAGAC ATTAACCAGC 2641 TTCCTGAGAC ATGCCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat 2701 caatttgttg caacgaac