Construct: ORF ccsbBroadEn_07378
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015774.1_s300c1, BRDN0000387715
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RAB11B (9230)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9230 | RAB11B | RAB11B, member RAS oncogene... | NM_004218.4 | 99.8% | 100% | 552C>T |
| 2 | human | 8766 | RAB11A | RAB11A, member RAS oncogene... | NM_004663.5 | 71.8% | 91.2% | (many diffs) |
| 3 | human | 8766 | RAB11A | RAB11A, member RAS oncogene... | NM_001206836.2 | 53.1% | 67.4% | (many diffs) |
| 4 | mouse | 19326 | Rab11b | RAB11B, member RAS oncogene... | NM_008997.3 | 91.5% | 99% | (many diffs) |
| 5 | mouse | 19326 | Rab11b | RAB11B, member RAS oncogene... | XM_006523887.3 | 85.6% | 92.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 723
- ORF length:
- 654
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGGACCCGG GACGACGAGT ACGACTACCT ATTCAAAGTG GTGCTCATCG 121 GGGACTCAGG CGTGGGCAAG AGCAACCTGC TGTCGCGCTT CACCCGCAAC GAGTTCAACC 181 TGGAGAGCAA GAGCACCATC GGCGTGGAGT TCGCCACCCG CAGCATCCAG GTGGACGGCA 241 AGACCATCAA GGCGCAGATC TGGGACACCG CTGGCCAGGA GCGCTACCGC GCCATCACCT 301 CCGCGTACTA CCGTGGTGCA GTGGGCGCCC TGCTGGTGTA CGACATCGCC AAGCACCTGA 361 CCTATGAGAA CGTGGAGCGC TGGCTGAAGG AGCTGCGGGA CCACGCAGAC AGCAACATCG 421 TCATCATGCT GGTGGGCAAC AAGAGTGACC TGCGCCACCT GCGGGCTGTG CCCACTGACG 481 AGGCCCGCGC CTTCGCAGAA AAGAACAACT TGTCCTTCAT CGAGACCTCA GCCTTGGATT 541 CCACTAACGT AGAGGAAGCA TTCAAGAACA TCCTCACAGA GATCTACCGC ATCGTGTCAC 601 AGAAACAGAT CGCAGACCGT GCTGCCCACG ACGAGTCCCC GGGGAACAAC GTGGTGGACA 661 TCAGCGTGCC GCCCACCACG GACGGACAGA AGCCCAACAA GCTGCAGTGC TGCCAGAACC 721 TGTTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 781 gcaacgaac