Transcript: Human NM_001206836.2

Homo sapiens RAB11A, member RAS oncogene family (RAB11A), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-06-23
Taxon:
Homo sapiens (human)
Gene:
RAB11A (8766)
Length:
4800
CDS:
96..563

Additional Resources:

NCBI RefSeq record:
NM_001206836.2
NBCI Gene record:
RAB11A (8766)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001206836.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000100343 ACCTCTTTAAAGTTGTCCTTA pLKO.1 124 CDS 100% 4.950 6.930 N Rab11a n/a
2 TRCN0000073020 CCTGTCTCGATTTACTCGAAA pLKO.1 176 CDS 100% 4.950 6.930 N RAB11A n/a
3 TRCN0000073021 GAGCTATAACATCAGCATATT pLKO.1 316 CDS 100% 13.200 10.560 N RAB11A n/a
4 TRCN0000307789 GAGCTATAACATCAGCATATT pLKO_005 316 CDS 100% 13.200 10.560 N RAB11A n/a
5 TRCN0000380662 TATCATGCTTGTGGGCAATAA pLKO_005 449 CDS 100% 13.200 10.560 N RAB11A n/a
6 TRCN0000073018 CCCTATAAACATAGCAGGATT pLKO.1 1100 3UTR 100% 4.950 3.960 N RAB11A n/a
7 TRCN0000331257 ACCTATTGGTCTTGATCAAAT pLKO_005 972 3UTR 100% 13.200 9.240 N RAB11A n/a
8 TRCN0000381214 AGCAACAATGTGGTTCCTATT pLKO_005 574 3UTR 100% 10.800 7.560 N RAB11A n/a
9 TRCN0000381243 AGTTGTCCTTATTGGAGATTC pLKO_005 134 CDS 100% 10.800 7.560 N RAB11A n/a
10 TRCN0000303291 ATCATGCTGATAGTAACATTG pLKO_005 427 CDS 100% 10.800 7.560 N RAB11A n/a
11 TRCN0000073019 CGAGCTATAACATCAGCATAT pLKO.1 315 CDS 100% 10.800 7.560 N RAB11A n/a
12 TRCN0000100341 GAGAGATCATGCTGATAGTAA pLKO.1 422 CDS 100% 5.625 3.938 N Rab11a n/a
13 TRCN0000324936 GAGAGATCATGCTGATAGTAA pLKO_005 422 CDS 100% 5.625 3.938 N Rab11a n/a
14 TRCN0000073022 GCCTTATTGGTTTATGACATT pLKO.1 354 CDS 100% 4.950 3.465 N RAB11A n/a
15 TRCN0000291939 GCCTTATTGGTTTATGACATT pLKO_005 354 CDS 100% 4.950 3.465 N RAB11A n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001206836.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02009 pDONR223 100% 71.7% 68% None 438_439ins95;465_466ins88 n/a
2 ccsbBroad304_02009 pLX_304 0% 71.7% 68% V5 438_439ins95;465_466ins88 n/a
3 TRCN0000475089 AGTACCGCGCTGCGCACCGTGATT pLX_317 41.4% 71.7% 68% V5 438_439ins95;465_466ins88 n/a
4 ccsbBroadEn_07378 pDONR223 100% 53.1% 67.4% None (many diffs) n/a
5 ccsbBroad304_07378 pLX_304 0% 53.1% 67.4% V5 (many diffs) n/a
Download CSV