Construct: ORF ccsbBroadEn_07411

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005473.1_s300c1, BRDN0000389003
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LPXN (9404)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9404 LPXN leupaxin NM_004811.2 99.9% 100% 405G>C
2 human 9404 LPXN leupaxin NM_001143995.2 98.2% 97.6% (many diffs)
3 human 9404 LPXN leupaxin NM_001307951.1 94.7% 76.1% 0_1insATGGAAGAGTTAG;157_158ins47;345G>C
4 human 9404 LPXN leupaxin XM_011545388.3 94.7% 76.1% 0_1insATGGAAGAGTTAG;157_158ins47;345G>C
5 human 9404 LPXN leupaxin XM_011545390.2 94.7% 76.1% 0_1insATGGAAGAGTTAG;157_158ins47;345G>C
6 human 9404 LPXN leupaxin XM_011545391.3 94.7% 76.1% 0_1insATGGAAGAGTTAG;157_158ins47;345G>C
7 human 9404 LPXN leupaxin XM_006718750.1 75% 75.1% 0_1ins288;117G>C
8 human 9404 LPXN leupaxin XM_017018579.2 67.6% 60.4% (many diffs)
9 human 9404 LPXN leupaxin XM_011545394.3 64.3% 64.2% (many diffs)
10 human 9404 LPXN leupaxin XM_011545393.3 63% 62.4% (many diffs)
11 mouse 107321 Lpxn leupaxin NM_134152.3 86.8% 85.2% (many diffs)
12 mouse 107321 Lpxn leupaxin XM_006526576.2 66.5% 67.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1224
ORF length:
1158
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGAGTTAGAT GCCTTATTGG AGGAACTGGA ACGCTCCACC CTTCAGGACA
121GTGATGAATA TTCCAACCCA GCTCCTCTTC CCCTGGATCA GCATTCCAGA AAGGAGACTA
181ACCTTGATGA GACTTCGGAG ATCCTTTCTA TTCAGGATAA CACAAGTCCC TTGCCGGCGC
241AGCTCGTGTA TACTACCAAT ATCCAGGAGC TCAATGTCTA CAGTGAAGCC CAAGAGCCAA
301AGGAATCACC ACCACCTTCT AAAACGTCAG CAGCTGCTCA GTTGGATGAG CTCATGGCTC
361ACCTGACTGA GATGCAGGCC AAGGTTGCAG TGAGAGCAGA TGCTGGCAAG AAGCACTTAC
421CAGACAAGCA GGATCACAAG GCCTCCCTGG ACTCAATGCT TGGGGGTCTC GAGCAGGAAT
481TGCAGGACCT TGGCATTGCC ACAGTGCCCA AGGGCCATTG TGCATCCTGC CAGAAACCGA
541TTGCTGGGAA GGTGATCCAT GCTCTAGGGC AATCATGGCA TCCTGAGCAT TTTGTCTGTA
601CTCATTGCAA AGAAGAGATT GGCTCCAGTC CCTTCTTTGA GCGGAGTGGC TTGGCCTACT
661GCCCCAACGA CTACCACCAA CTTTTTTCTC CACGCTGTGC TTACTGCGCT GCTCCCATCC
721TGGATAAAGT GCTGACAGCA ATGAACCAGA CCTGGCACCC AGAGCACTTC TTCTGCTCTC
781ACTGCGGAGA GGTGTTTGGT GCAGAAGGCT TTCATGAGAA GGACAAGAAG CCATATTGCC
841GAAAGGATTT CTTAGCCATG TTCTCACCCA AGTGTGGTGG CTGCAATCGC CCAGTGTTGG
901AAAACTACCT TTCAGCCATG GACACTGTCT GGCACCCAGA GTGCTTTGTT TGTGGGGACT
961GCTTCACCAG TTTTTCTACT GGCTCCTTCT TTGAACTGGA TGGACGTCCA TTCTGTGAGC
1021TCCATTACCA TCACCGCCGG GGAACGCTCT GCCATGGGTG TGGGCAGCCC ATCACTGGCC
1081GTTGTATCAG TGCCATGGGG TACAAGTTCC ATCCTGAGCA CTTTGTGTGT GCTTTCTGCC
1141TGACACAGTT GTCGAAGGGC ATTTTCAGGG AGCAGAATGA CAAGACCTAT TGTCAACCTT
1201GCTTCAATAA GCTCTTCCCA CTGTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1261agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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