Construct: ORF ccsbBroadEn_07482

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011991.1_s300c1, BRDN0000396597
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNPH (9751)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9751 SNPH syntaphilin NM_014723.4 99.9% 100% 18A>T
2 human 9751 SNPH syntaphilin XM_005260889.3 93.6% 93.7% 18A>T;48_146del
3 human 9751 SNPH syntaphilin XM_011529404.2 93.6% 93.7% 18A>T;48_146del
4 human 9751 SNPH syntaphilin NM_001318234.2 91.7% 91.8% 1_132del;150A>T
5 human 9751 SNPH syntaphilin XM_011529402.2 86.4% 86.5% 1_132del;150A>T;180_278del
6 human 9751 SNPH syntaphilin XM_011529403.2 86.4% 86.5% 1_132del;150A>T;180_278del
7 mouse 241727 Snph syntaphilin NM_001291076.1 87.6% 90.7% (many diffs)
8 mouse 241727 Snph syntaphilin NM_198214.3 82.1% 85.1% (many diffs)
9 mouse 241727 Snph syntaphilin XM_011239538.1 82.1% 85.1% (many diffs)
10 mouse 241727 Snph syntaphilin XM_017318258.1 81.3% 76.9% (many diffs)
11 mouse 241727 Snph syntaphilin NM_001291077.1 80.9% 83.7% (many diffs)
12 mouse 241727 Snph syntaphilin XM_017318256.1 80.5% 83.3% (many diffs)
13 mouse 241727 Snph syntaphilin XM_011239535.1 75.8% 78.6% (many diffs)
14 mouse 241727 Snph syntaphilin XM_011239536.1 75.8% 78.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1548
ORF length:
1482
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CATGTCCCTG CCTGGAAGTA GACGGACCTC TGCTGGATCA CGCAGGCGCA
121CCTCTCCACC TGTGAGCGTG CGGGATGCCT ACGGCACCTC TTCGCTCAGC AGCAGCAGCA
181ATTCTGGCTC CTACAAGGGC AGTGACAGCA GTCCCACGCC AAGGCGCTCC ATGAAATACA
241CGCTGTGCAG TGACAACCAT GGCATCAAGC CCCCGACCCC GGAGCAGTAC CTGACCCCCC
301TGCAGCAGAA GGAGGTGTGC ATCCGGCACC TGAAAGCCCG GCTGAAGGAC ACACAGGACC
361GGCTCCAGGA CCGGGACACA GAGATTGATG ACCTGAAGAC GCAGCTGTCA CGCATGCAGG
421AGGACTGGAT TGAGGAGGAG TGCCACCGCG TGGAGGCCCA GCTGGCCCTG AAGGAGGCCC
481GAAAGGAGAT CAAGCAGCTC AAGCAGGTCA TCGACACTGT CAAGAACAAC CTGATTGACA
541AGGACAAGGG GCTGCAGAAG TACTTCGTGG ACATCAACAT CCAGAACAAG AAGCTGGAGA
601CGCTGCTGCA CAGCATGGAG GTGGCCCAGA ATGGCATGGC CAAGGAGGAT GGCACTGGGG
661AGTCAGCCGG TGGGTCCCCT GCCCGCTCCC TCACCCGCAG CTCCACCTAC ACCAAGCTGA
721GTGACCCGGC TGTCTGTGGT GACCGCCAGC CGGGTGATCC CTCCAGCGGC TCTGCTGAGG
781ATGGGGCAGA CAGTGGCTTT GCAGCAGCCG ATGACACACT GAGCCGGACG GACGCGCTGG
841AAGCCAGCAG CCTGCTGTCG TCGGGGGTGG ACTGTGGCAC CGAGGAGACC TCGCTGCACA
901GCTCCTTCGG CCTGGGCCCC CGCTTCCCTG CCAGCAACAC CTATGAGAAG CTGCTGTGTG
961GCATGGAGGC TGGTGTGCAG GCCAGCTGCA TGCAGGAGCG TGCCATCCAG ACAGACTTCG
1021TGCAGTACCA GCCTGACCTT GACACCATCC TGGAGAAAGT GACCCAGGCC CAGGTCTGTG
1081GGACAGACCC TGAGTCAGGG GACAGGTGCC CAGAGCTGGA TGCCCACCCT TCAGGGCCCA
1141GAGACCCCAA CTCAGCAGTG GTGGTGACAG TGGGTGATGA GCTAGAGGCC CCAGAGCCCA
1201TCACCCGTGG ACCCACCCCA CAGCGGCCTG GTGCCAACCC CAACCCTGGC CAGTCGGTGA
1261GCGTGGTGTG CCCCATGGAA GAGGAGGAGG AGGCTGCCGT GGCTGAGAAG GAGCCCAAGA
1321GCTACTGGAG CCGCCACTAC ATCGTGGATC TGCTGGCTGT GGTGGTGCCG GCCGTGCCCA
1381CGGTGGCCTG GCTTTGCCGC TCCCAGCGGC GCCAGGGCCA GCCCATCTAC AACATCAGCT
1441CCCTGCTGCG GGGCTGCTGC ACTGTGGCCT TGCACTCCAT CCGCAGGATC AGCTGCCGCT
1501CGCTGAGCCA GCCGAGTCCC AGCCCAGCGG GCGGCGGCTC CCAGCTCTGC CCAACTTTCT
1561TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)