Construct: ORF ccsbBroadEn_07535
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011895.1_s300c1, BRDN0000386525
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PARP3 (10039)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10039 | PARP3 | poly(ADP-ribose) polymerase... | NM_001370239.1 | 100% | 100% | |
| 2 | human | 10039 | PARP3 | poly(ADP-ribose) polymerase... | NM_001370240.1 | 100% | 100% | |
| 3 | human | 10039 | PARP3 | poly(ADP-ribose) polymerase... | NM_005485.5 | 100% | 100% | |
| 4 | human | 10039 | PARP3 | poly(ADP-ribose) polymerase... | XM_017005490.1 | 100% | 100% | |
| 5 | human | 10039 | PARP3 | poly(ADP-ribose) polymerase... | NM_001003931.3 | 98.7% | 98.7% | 1_21del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1665
- ORF length:
- 1599
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCCAAAGCCG AAGCCCTGGG TACAGACTGA GGGCCCTGAG AAGAAGAAGG 121 GCCGGCAGGC AGGAAGGGAG GAGGACCCCT TCCGCTCCAC CGCTGAGGCC CTCAAGGCCA 181 TACCCGCAGA GAAGCGCATA ATCCGCGTGG ATCCAACATG TCCACTCAGC AGCAACCCCG 241 GGACCCAGGT GTATGAGGAC TACAACTGCA CCCTGAACCA GACCAACATC GAGAACAACA 301 ACAACAAGTT CTACATCATC CAGCTGCTCC AAGACAGCAA CCGCTTCTTC ACCTGCTGGA 361 ACCGCTGGGG CCGTGTGGGA GAGGTCGGCC AGTCAAAGAT CAACCACTTC ACAAGGCTAG 421 AAGATGCAAA GAAGGACTTT GAGAAGAAAT TTCGGGAAAA GACCAAGAAC AACTGGGCAG 481 AGCGGGACCA CTTTGTGTCT CACCCGGGCA AGTACACACT TATCGAAGTA CAGGCAGAGG 541 ATGAGGCCCA GGAAGCTGTG GTGAAGGTGG ACAGAGGCCC AGTGAGGACT GTGACTAAGC 601 GGGTGCAGCC CTGCTCCCTG GACCCAGCCA CGCAGAAGCT CATCACTAAC ATCTTCAGCA 661 AGGAGATGTT CAAGAACACC ATGGCCCTCA TGGACCTGGA TGTGAAGAAG ATGCCCCTGG 721 GAAAGCTGAG CAAGCAACAG ATTGCACGGG GTTTCGAGGC CTTGGAGGCG CTGGAGGAGG 781 CCCTGAAAGG CCCCACGGAT GGTGGCCAAA GCCTGGAGGA GCTGTCCTCA CACTTTTACA 841 CCGTCATCCC GCACAACTTC GGCCACAGCC AGCCCCCGCC CATCAATTCC CCTGAGCTTC 901 TGCAGGCCAA GAAGGACATG CTGCTGGTGC TGGCGGACAT CGAGCTGGCC CAGGCCCTGC 961 AGGCAGTCTC TGAGCAGGAG AAGACGGTGG AGGAGGTGCC ACACCCCCTG GACCGAGACT 1021 ACCAGCTTCT CAAGTGCCAG CTGCAGCTGC TAGACTCTGG AGCACCTGAG TACAAGGTGA 1081 TACAGACCTA CTTAGAACAG ACTGGCAGCA ACCACAGGTG CCCTACACTT CAACACATCT 1141 GGAAAGTAAA CCAAGAAGGG GAGGAAGACA GATTCCAGGC CCACTCCAAA CTGGGTAATC 1201 GGAAGCTGCT GTGGCATGGC ACCAACATGG CCGTGGTGGC CGCCATCCTC ACTAGTGGGC 1261 TCCGCATCAT GCCACATTCT GGTGGGCGTG TTGGCAAGGG CATCTACTTT GCCTCAGAGA 1321 ACAGCAAGTC AGCTGGATAT GTTATTGGCA TGAAGTGTGG GGCCCACCAT GTCGGCTACA 1381 TGTTCCTGGG TGAGGTGGCC CTGGGCAGAG AGCACCATAT CAACACGGAC AACCCCAGCT 1441 TGAAGAGCCC ACCTCCTGGC TTCGACAGTG TCATTGCCCG AGGCCACACC GAGCCTGATC 1501 CGACCCAGGA CACTGAGTTG GAGCTGGATG GCCAGCAAGT GGTGGTGCCC CAGGGCCAGC 1561 CTGTGCCCTG CCCAGAGTTC AGCAGCTCCA CATTCTCCCA GAGCGAGTAC CTCATCTACC 1621 AGGAGAGCCA GTGTCGCCTG CGCTACCTGC TGGAGGTCCA CCTCTGCCCA ACTTTCTTGT 1681 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c