Construct: ORF ccsbBroadEn_07536
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014071.1_s300c1, BRDN0000393034
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SH2D3C (10044)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10044 | SH2D3C | SH2 domain containing 3C | NM_005489.4 | 99.9% | 100% | 1614C>T |
| 2 | human | 10044 | SH2D3C | SH2 domain containing 3C | NM_001142534.1 | 97.3% | 96.7% | (many diffs) |
| 3 | human | 10044 | SH2D3C | SH2 domain containing 3C | NM_001142533.1 | 97.1% | 96.1% | (many diffs) |
| 4 | human | 10044 | SH2D3C | SH2 domain containing 3C | NM_001252334.1 | 87.9% | 87.5% | (many diffs) |
| 5 | human | 10044 | SH2D3C | SH2 domain containing 3C | NM_170600.3 | 81% | 80.3% | (many diffs) |
| 6 | human | 10044 | SH2D3C | SH2 domain containing 3C | NM_001142531.1 | 71.9% | 71.9% | 0_1ins591;1023C>T |
| 7 | human | 10044 | SH2D3C | SH2 domain containing 3C | NM_001142532.1 | 71.9% | 71.9% | 0_1ins591;1023C>T |
| 8 | mouse | 27387 | Sh2d3c | SH2 domain containing 3C | NM_001252547.1 | 88% | 90.8% | (many diffs) |
| 9 | mouse | 27387 | Sh2d3c | SH2 domain containing 3C | NM_013781.3 | 72.1% | 73.5% | (many diffs) |
| 10 | mouse | 27387 | Sh2d3c | SH2 domain containing 3C | XM_006498095.2 | 71% | 72.5% | (many diffs) |
| 11 | mouse | 27387 | Sh2d3c | SH2 domain containing 3C | XM_006498096.2 | 63.4% | 65% | (many diffs) |
| 12 | mouse | 27387 | Sh2d3c | SH2 domain containing 3C | XM_017318941.1 | 63.4% | 65% | (many diffs) |
| 13 | mouse | 27387 | Sh2d3c | SH2 domain containing 3C | NR_045535.1 | 52.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2175
- ORF length:
- 2109
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaCTTTTG TACAAAAAAG 61 TTGGCATGAC TGCTGTGGGC CGAAGGTGCC CCGCGCTGGG GTCCCGAGGG GCTGCTGGAG 121 AGCCAGAGGC TGGCAGCGAC TATGTGAAGT TCTCCAAGGA GAAGTACATC CTGGACTCAT 181 CGCCAGAGAA ACTCCACAAG GAATTGGAGG AGGAGCTCAA ACTCAGCAGC ACGGATCTCC 241 GCAGCCATGC CTGGTACCAT GGCCGCATCC CCCGAGAGGT CTCGGAGACC TTGGTACAAC 301 GCAACGGCGA CTTCCTCATC CGGGACTCAC TCACCAGCCT GGGCGACTAT GTGCTCACGT 361 GCCGCTGGCG CAACCAGGCC TTGCACTTCA AGATCAACAA GGTGGTGGTG AAGGCAGGCG 421 AGAGCTACAC ACACATCCAG TACCTGTTTG AGCAGGAGAG CTTTGACCAC GTGCCCGCCC 481 TCGTGCGCTA TCATGTGGGC AGCCGCAAGG CTGTGTCAGA GCAGAGTGGT GCCATCATCT 541 ACTGCCCGGT GAACCGCACC TTCCCACTGC GCTACCTCGA GGCCAGCTAT GGCCTGGGAC 601 AGGGGAGTAG CAAGCCTGCT AGCCCCGTCA GCCCCTCAGG CCCCAAGGGC AGCCACATGA 661 AGCGGCGCAG CGTCACCATG ACCGATGGGC TCACTGCTGA CAAGGTCACC CGCAGCGATG 721 GCTGCCCCAC CAGTACGTCG CTGCCCCGCC CTCGGGACTC CATCCGCAGC TGTGCCCTCA 781 GCATGGACCA GATCCCAGAC CTGCACTCAC CCATGTCGCC CATCTCCGAG AGCCCTAGCT 841 CCCCTGCCTA CAGCACTGTA ACCCGTGTCC ATGCCGCCCC TGCAGCCCCT TCTGCCACAG 901 CATTGCCTGC CTCCCCTGTC GCCCGCCGTT CCAGTGAGCC CCAGCTGTGT CCCGGAAGTG 961 CCCCAAAGAC CCATGGGGAG TCAGACAAGG GCCCCCACAC CAGCCCCTCC CACACCCTTG 1021 GCAAGGCCTC CCCGTCACCA TCACTCAGCA GCTACAGTGA CCCGGACTCT GGCCACTACT 1081 GCCAGCTCCA GCCTCCCGTG CGTGGCAGCC GAGAGTGGGC AGCGACTGAG ACCTCCAGCC 1141 AGCAGGCCAG GAGCTATGGG GAGAGGCTAA AGGAACTGTC AGAAAATGGG GCCCCTGAAG 1201 GGGACTGGGG CAAGACCTTC ACAGTCCCCA TCGTGGAAGT CACTTCTTCC TTCAACCCGG 1261 CCACCTTCCA GTCACTACTG ATCCCCAGGG ATAACCGGCC ACTGGAGGTG GGCCTTCTGC 1321 GCAAGGTCAA GGAGCTGCTG GCAGAAGTGG ATGCCCGGAC GCTGGCCCGG CATGTCACCA 1381 AGGTGGACTG CCTGGTTGCT AGGATACTGG GCGTTACCAA GGAGATGCAG ACCCTAATGG 1441 GAGTCCGCTG GGGCATGGAA CTGCTCACCC TCCCCCATGG CCGGCAGCTA CGCCTAGACC 1501 TGCTGGAAAG GTTCCACACC ATGTCCATCA TGCTGGCCGT GGACATCCTG GGCTGCACCG 1561 GCTCTGCGGA GGAGCGGGCA GCGCTGCTGC ACAAGACCAT TCAGCTGGCG GCCGAGCTGC 1621 GGGGGACTAT GGGCAACATG TTCAGCTTCG CGGCGGTCAT GGGTGCCCTG GACATGGCTC 1681 AGATTTCTCG GCTGGAGCAG ACATGGGTGA CCCTGCGGCA GCGACACACA GAGGGTGCCA 1741 TCCTGTACGA GAAGAAGCTC AAGCCTTTTC TCAAGAGCCT CAACGAGGGC AAAGAAGGCC 1801 CGCCGCTGAG CAACACCACG TTTCCTCATG TGCTGCCCCT CATCACCCTG CTGGAGTGTG 1861 ACTCGGCCCC ACCAGAGGGC CCTGAGCCCT GGGGCAGCAC GGAGCACGGC GTGGAGGTGG 1921 TGCTGGCTCA CCTGGAGGCC GCCCGCACAG TGGCACACCA CGGAGGCCTG TACCACACCA 1981 ATGCTGAAGT CAAGCTGCAG GGGTTCCAGG CCCGGCCGGA GCTCCTGGAG GTGTTCAGCA 2041 CGGAGTTCCA GATGCGCCTT CTCTGGGGCA GTCAGGGTGC CAGCAGCAGC CAGGCCCGGC 2101 GCTATGAGAA GTTCGACAAG GTCCTCACTG CCCTGTCCCA CAAGCTGGAA CCTGCTGTCC 2161 GCTCCAGCGA GCTGTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 2221 tatcaatttg ttgcaacgaa c