Construct: ORF ccsbBroadEn_07584
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006849.1_s300c1, BRDN0000393709
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KATNB1 (10300)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10300 | KATNB1 | katanin regulatory subunit B1 | NM_005886.3 | 99.9% | 100% | 726C>T |
| 2 | mouse | 74187 | Katnb1 | katanin p80 (WD40-containin... | NM_028805.2 | 88.8% | 95.1% | (many diffs) |
| 3 | mouse | 74187 | Katnb1 | katanin p80 (WD40-containin... | XM_006531410.3 | 88.8% | 95.1% | (many diffs) |
| 4 | mouse | 74187 | Katnb1 | katanin p80 (WD40-containin... | XM_006531411.3 | 88.8% | 95.1% | (many diffs) |
| 5 | mouse | 74187 | Katnb1 | katanin p80 (WD40-containin... | XM_006531412.1 | 88.8% | 95.1% | (many diffs) |
| 6 | mouse | 74187 | Katnb1 | katanin p80 (WD40-containin... | XR_001778483.1 | 65.3% | (many diffs) | |
| 7 | mouse | 74187 | Katnb1 | katanin p80 (WD40-containin... | XR_387781.3 | 64.7% | (many diffs) | |
| 8 | mouse | 74187 | Katnb1 | katanin p80 (WD40-containin... | XR_001778484.1 | 63.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2031
- ORF length:
- 1965
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttAGGATGGC CACCCCTGTG GTCACCAAGA CAGCCTGGAA GTTGCAAGAG ATCGTCGCGC 121 ATGCCAGCAA CGTGTCCTCA CTGGTGCTGG GCAAAGCCTC CGGGCGGCTG CTGGCTACAG 181 GCGGGGATGA CTGCCGCGTC AACCTGTGGT CCATCAACAA GCCCAACTGC ATCATGAGCC 241 TGACGGGCCA CACATCCCCA GTGGAGAGCG TCCGCCTCAA CACCCCCGAG GAGCTCATCG 301 TGGCCGGCTC TCAGTCGGGC TCCATCCGTG TCTGGGACCT GGAAGCTGCC AAAATTCTTC 361 GCACACTCAT GGGACACAAA GCCAACATCT GCAGCCTGGA TTTCCACCCG TACGGCGAGT 421 TTGTAGCCTC TGGTTCCCAG GACACAAACA TCAAGCTCTG GGACATCAGG AGGAAAGGCT 481 GTGTCTTCCG ATACAGGGGG CACAGCCAGG CCGTGCGGTG TCTCCGGTTC AGCCCCGATG 541 GGAAGTGGTT GGCGTCGGCC GCAGATGACC ACACCGTGAA GCTCTGGGAT CTCACTGCCG 601 GCAAGATGAT GTCTGAGTTC CCTGGTCACA CGGGGCCTGT CAACGTGGTC GAGTTTCACC 661 CCAACGAGTA CCTCCTGGCC TCCGGCAGCT CTGACAGGAC AATCCGCTTC TGGGACCTGG 721 AGAAGTTCCA GGTGGTGAGC TGCATCGAAG GGGAGCCTGG GCCCGTCAGG AGCGTCCTCT 781 TCAACCCAGA TGGCTGCTGC CTGTACAGCG GCTGCCAGGA CTCACTGCGT GTCTACGGCT 841 GGGAACCTGA GCGGTGCTTT GATGTGGTCC TCGTCAACTG GGGCAAGGTG GCCGACCTGG 901 CCATCTGCAA TGACCAGTTG ATAGGTGTGG CCTTCTCCCA GAGCAACGTC TCCTCCTACG 961 TGGTGGATCT GACGCGTGTC ACCAGGACTG GCACGGTGGC CCGGGACCCT GTGCAGGACC 1021 ACCGGCCCCT GGCACAGCCA CTGCCCAACC CCAGCGCCCC CCTCCGGCGC ATCTATGAGC 1081 GGCCCAGCAC AACCTGCAGC AAGCCTCAGA GGGTGAAGCA GAACTCAGAG AGCGAGCGCC 1141 GCAGCCCCAG CAGCGAGGAT GACCGGGACG AGCGCGAGTC CCGCGCGGAG ATCCAGAACG 1201 CCGAGGACTA CAACGAGATC TTCCAGCCCA AGAACAGCAT CAGTCGGACG CCACCCCGGA 1261 GAAGTGAGCC CTTCCCTGCA CCCCCAGAGG ACGACGCAGC CACAGCAAAG GAGGCAGCAA 1321 AGCCCAGCCC TGCCATGGAT GTGCAGTTCC CGGTGCCAAA TCTGGAGGTC CTGCCCCGGC 1381 CCCCAGTGGT TGCTTCCACA CCTGCACCCA AGGCTGAGCC TGCCATCATC CCTGCCACCC 1441 GGAACGAGCC CATCGGGCTG AAGGCCTCCG ACTTCCTGCC CGCCGTGAAG ATCCCCCAGC 1501 AGGCCGAGCT GGTGGACGAG GATGCCATGT CACAGATCCG CAAAGGCCAC GACACCATGT 1561 GTGTGGTGCT CACCAGCCGC CACAAGAACC TGGACACTGT GCGGGCTGTG TGGACCATGG 1621 GCGACATCAA GACGTCGGTG GACTCCGCTG TGGCCATCAA CGACCTGTCG GTGGTGGTGG 1681 ACCTCCTGAA CATCGTCAAC CAGAAAGCCT CCCTGTGGAA GCTGGACCTG TGCACCACCG 1741 TCCTGCCACA GATTGAGAAG CTTCTGCAGA GCAAGTATGA GAGCTACGTC CAGACGGGCT 1801 GCACCTCCCT GAAGCTGATC CTGCAGCGGT TTCTGCCCCT CATCACAGAC ATGCTGGCGG 1861 CCCCACCCTC TGTGGGTGTG GATATCAGCA GGGAGGAGAG GCTGCATAAG TGCCGGCTCT 1921 GCTACAAGCA GCTTAAGAGC ATCAGCGGCC TGGTCAAGAG CAAGTCAGGC CTGAGCGGCC 1981 GCCATGGCAG TACCTTCCGC GAGCTGCACC TGCTCATGGC CAGTCTGGAC TGcccaactt 2041 tcttgtacaa agttggcatt ataagaaagc attgcttatc aatttgttgc aacgaac