Construct: ORF ccsbBroadEn_07614

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014145.1_s300c1, BRDN0000393727
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC30A9 (10463)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10463 SLC30A9 solute carrier family 30 me... NM_006345.4 99.7% 99.6% (many diffs)
2 human 10463 SLC30A9 solute carrier family 30 me... XM_017007654.2 94.8% 93.4% (many diffs)
3 human 10463 SLC30A9 solute carrier family 30 me... XR_001741095.2 51% (many diffs)
4 mouse 109108 Slc30a9 solute carrier family 30 (z... NM_178651.4 86.4% 88.9% (many diffs)
5 mouse 109108 Slc30a9 solute carrier family 30 (z... NM_001310629.1 83.4% 86.1% (many diffs)
6 mouse 109108 Slc30a9 solute carrier family 30 (z... XR_001784587.1 35% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1770
ORF length:
1704
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG
61TTGGCATGTT ACCGGGCTTG GCCGCCGCCG CGGCCCACAG ATGTAGCTGG TCCTCCCTGT
121GCCGGCTCCG TCTGCGATGC AGGGCGGCGG CCTGTAATCC CAGCGACCGC CAGGAGTGGC
181AGAATTTAGT GACATTTGGA AGCTTTTCAA ACGTGGTTCC CTGTAGTCAT CCATATATTG
241GTACCCTGAG TCAAGTAAAG TTGTACTCCA CAAATGTTCA GAAAGAAGGA CAGGGATCAC
301AAACACTCAG AGTGGAAAAA GTACCATCAT TTGAAACAGC AGAAGGTATA GGCGCAGAAC
361TCAAAGCTCC ACTTAAGCAA GAACCTCTCC AAGTAAGAGT TAAAGCAGTC CTTAAGAAAA
421GGGAGTATGG ATCAAAGTAC ACTCAGAATA ATTTCATCAC TGGAGTCAGA GCGATAAATG
481AGTTCTGCCT CAAATCCAGT GATCTAGAAC AACTTCGAAA AATCAGACGA CGAAGTCCCC
541ATGAAGATAC TGAGTCTTTT ACTGTATACT TGAGATCAGA TGTGGAAGCA AAATCTTTGG
601AAGTTTGGGG AAGCCCTGAA GCTCTTGCCA GAGAGAAAAA ATTGCGTAAG GAAGCAGAAA
661TAGAATACAG AGAAAGGCTA TTTAGAAACC AAAAAATATT AAGAGAATAC AGAGATTTCT
721TGGGAAATAC CAAGCCACGC TCCAGAACAG CATCAGTGTT TTTTAAGGGA CCAGGAAAAG
781TGGTGATGGT TGCAATTTGC ATCAATGGAT TAAACTGCTT CTTTAAATTT CTTGCCTGGA
841TTTATACCGG TTCAGCAAGT ATGTTCTCAG AAGCTATACA CTCATTATCT GATACTTGTA
901ATCAGGGTTT ACTAGCATTG GGCATCAGTA AGTCTGTTCA AACACCAGAT CCTTCTCATC
961CGTACGGATT TTCAAATATG CGCTATATTT CTTCGCTAAT TAGTGGTGTT GGTATTTTCA
1021TGATGGGTGC AGGACTATCT TGGTACCATG GAGTCATGGG ATTGCTTCAT CCTCAACCAA
1081TAGAATCCCT TCTATGGGCA TATTGTATTT TAGCAGGATC ATTAGTATCT GAAGGAGCAA
1141CACTTCTTGT TGCTGTAAAT GAACTTCGTA GGAATGCTCG GGCTAAAGGA ATGTCATTTT
1201ACAAGTATGT AATGGAAAGT CGTGATCCTA GTACAAATGT GATATTATTG GAGGATACTG
1261CTGCAGTCTT GGGAGTTATA ATAGCAGCCA CTTGCATGGG CCTTACTTCT ATAACAGGCA
1321ATCCACTGTA TGACAGCCTA GGTTCTTTGG GTGTGGGCAC CTTATTAGGC ATGGTCTCAG
1381CATTCCTCAT CTACACTAAC ACAGAAGCAC TCTTAGGGCG GTCCATCCAG CCAGAACAAG
1441TACAACGGCT CACTGAACTC CTGGAGAATG ACCCATCAGT AAGGGCAATT CATGATGTTA
1501AAGCCACAGA TCTGGGATTA GGTAAAGTAA GATTTAAGGC AGAAGTAGAT TTTGATGGGC
1561GAGTTGTTAC AAGATCATAT TTGGAAAAAC AAGATTTTGA CCAAATGTTA CAAGAAATTC
1621AAGAAGTGAA AACTCCTGAA GAACTAGAGA CCTTTATGCT TAAACATGGA GAAAATATTA
1681TTGATACTTT AGGAGCTGAA GTAGATAGAC TTGAGAAGGA ACTGAAAAAA CGAAATCCTG
1741AAGTTCGACA TGTAGATTTG GAGATACTGT GCCCAACTTT CTTGTACAAA GTtggcatta
1801taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)