Construct: ORF ccsbBroadEn_07614
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014145.1_s300c1, BRDN0000393727
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC30A9 (10463)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10463 | SLC30A9 | solute carrier family 30 me... | NM_006345.4 | 99.7% | 99.6% | (many diffs) |
| 2 | human | 10463 | SLC30A9 | solute carrier family 30 me... | XM_017007654.2 | 94.8% | 93.4% | (many diffs) |
| 3 | human | 10463 | SLC30A9 | solute carrier family 30 me... | XR_001741095.2 | 51% | (many diffs) | |
| 4 | mouse | 109108 | Slc30a9 | solute carrier family 30 (z... | NM_178651.4 | 86.4% | 88.9% | (many diffs) |
| 5 | mouse | 109108 | Slc30a9 | solute carrier family 30 (z... | NM_001310629.1 | 83.4% | 86.1% | (many diffs) |
| 6 | mouse | 109108 | Slc30a9 | solute carrier family 30 (z... | XR_001784587.1 | 35% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1770
- ORF length:
- 1704
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG 61 TTGGCATGTT ACCGGGCTTG GCCGCCGCCG CGGCCCACAG ATGTAGCTGG TCCTCCCTGT 121 GCCGGCTCCG TCTGCGATGC AGGGCGGCGG CCTGTAATCC CAGCGACCGC CAGGAGTGGC 181 AGAATTTAGT GACATTTGGA AGCTTTTCAA ACGTGGTTCC CTGTAGTCAT CCATATATTG 241 GTACCCTGAG TCAAGTAAAG TTGTACTCCA CAAATGTTCA GAAAGAAGGA CAGGGATCAC 301 AAACACTCAG AGTGGAAAAA GTACCATCAT TTGAAACAGC AGAAGGTATA GGCGCAGAAC 361 TCAAAGCTCC ACTTAAGCAA GAACCTCTCC AAGTAAGAGT TAAAGCAGTC CTTAAGAAAA 421 GGGAGTATGG ATCAAAGTAC ACTCAGAATA ATTTCATCAC TGGAGTCAGA GCGATAAATG 481 AGTTCTGCCT CAAATCCAGT GATCTAGAAC AACTTCGAAA AATCAGACGA CGAAGTCCCC 541 ATGAAGATAC TGAGTCTTTT ACTGTATACT TGAGATCAGA TGTGGAAGCA AAATCTTTGG 601 AAGTTTGGGG AAGCCCTGAA GCTCTTGCCA GAGAGAAAAA ATTGCGTAAG GAAGCAGAAA 661 TAGAATACAG AGAAAGGCTA TTTAGAAACC AAAAAATATT AAGAGAATAC AGAGATTTCT 721 TGGGAAATAC CAAGCCACGC TCCAGAACAG CATCAGTGTT TTTTAAGGGA CCAGGAAAAG 781 TGGTGATGGT TGCAATTTGC ATCAATGGAT TAAACTGCTT CTTTAAATTT CTTGCCTGGA 841 TTTATACCGG TTCAGCAAGT ATGTTCTCAG AAGCTATACA CTCATTATCT GATACTTGTA 901 ATCAGGGTTT ACTAGCATTG GGCATCAGTA AGTCTGTTCA AACACCAGAT CCTTCTCATC 961 CGTACGGATT TTCAAATATG CGCTATATTT CTTCGCTAAT TAGTGGTGTT GGTATTTTCA 1021 TGATGGGTGC AGGACTATCT TGGTACCATG GAGTCATGGG ATTGCTTCAT CCTCAACCAA 1081 TAGAATCCCT TCTATGGGCA TATTGTATTT TAGCAGGATC ATTAGTATCT GAAGGAGCAA 1141 CACTTCTTGT TGCTGTAAAT GAACTTCGTA GGAATGCTCG GGCTAAAGGA ATGTCATTTT 1201 ACAAGTATGT AATGGAAAGT CGTGATCCTA GTACAAATGT GATATTATTG GAGGATACTG 1261 CTGCAGTCTT GGGAGTTATA ATAGCAGCCA CTTGCATGGG CCTTACTTCT ATAACAGGCA 1321 ATCCACTGTA TGACAGCCTA GGTTCTTTGG GTGTGGGCAC CTTATTAGGC ATGGTCTCAG 1381 CATTCCTCAT CTACACTAAC ACAGAAGCAC TCTTAGGGCG GTCCATCCAG CCAGAACAAG 1441 TACAACGGCT CACTGAACTC CTGGAGAATG ACCCATCAGT AAGGGCAATT CATGATGTTA 1501 AAGCCACAGA TCTGGGATTA GGTAAAGTAA GATTTAAGGC AGAAGTAGAT TTTGATGGGC 1561 GAGTTGTTAC AAGATCATAT TTGGAAAAAC AAGATTTTGA CCAAATGTTA CAAGAAATTC 1621 AAGAAGTGAA AACTCCTGAA GAACTAGAGA CCTTTATGCT TAAACATGGA GAAAATATTA 1681 TTGATACTTT AGGAGCTGAA GTAGATAGAC TTGAGAAGGA ACTGAAAAAA CGAAATCCTG 1741 AAGTTCGACA TGTAGATTTG GAGATACTGT GCCCAACTTT CTTGTACAAA GTtggcatta 1801 taagaaagca ttgcttatca atttgttgca acgaac