Construct: ORF ccsbBroadEn_07618

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009610.1_s300c1, BRDN0000389852
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC9A6 (10479)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10479 SLC9A6 solute carrier family 9 mem... NM_001042537.1 99.9% 100% 1209C>A
2 human 10479 SLC9A6 solute carrier family 9 mem... NM_006359.3 95.3% 95.4% 428_429ins96;1113C>A
3 human 10479 SLC9A6 solute carrier family 9 mem... NM_001177651.2 92.5% 92.5% 0_1ins156;1053C>A
4 human 10479 SLC9A6 solute carrier family 9 mem... XM_006724726.3 92.5% 92.5% 0_1ins156;1053C>A
5 human 10479 SLC9A6 solute carrier family 9 mem... XM_017029223.2 92.5% 92.5% 0_1ins156;1053C>A
6 human 10479 SLC9A6 solute carrier family 9 mem... XM_017029224.1 92.5% 92.5% 0_1ins156;1053C>A
7 human 10479 SLC9A6 solute carrier family 9 mem... NM_001330652.2 87.9% 88% 0_1ins156;272_273ins96;957C>A
8 human 10479 SLC9A6 solute carrier family 9 mem... XM_017029225.1 87.9% 88% 0_1ins156;272_273ins96;957C>A
9 mouse 236794 Slc9a6 solute carrier family 9 (so... NM_172780.4 90.5% 96% (many diffs)
10 mouse 236794 Slc9a6 solute carrier family 9 (so... NM_001358861.1 84.8% 91.1% (many diffs)
11 mouse 236794 Slc9a6 solute carrier family 9 (so... XM_006527980.3 84.8% 91.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2169
ORF length:
2103
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TCGGCGCGGC TGGCGGCGGG CACCCCTCCG CCGTGGCGTC GGCAGCAGTC
121CCCGAGCCCG CAGGCTCATG CGGCCCCTTT GGTTGCTCCT CGCAGTGGGC GTCTTTGACT
181GGGCAGGGGC TTCGGACGGC GGCGGCGGAG AGGCTAGAGC CATGGACGAG GAGATCGTGT
241CCGAGAAGCA AGCCGAGGAG AGCCACCGGC AGGACAGCGC CAACCTGCTC ATCTTCATCC
301TGCTGCTCAC CCTCACCATT CTCACAATCT GGCTCTTCAA GCACCGCCGG GCCCGCTTCC
361TGCACGAAAC CGGCCTGGCT ATGATTTATG GTCTTTTGGT GGGCCTTGTG CTTCGGTATG
421GCATTCATGT TCCGAGTGAT GTAAATAATG TGACCCTGAG CTGTGAAGTG CAGTCAAGTC
481CAACTACCTT ACTGGTAAAT GTTAGTGGAA AATTTTATGA GTATATGCTG AAAGGAGAGA
541TTAGTTCACA TGAACTCAAT AATGTTCAAG ATAATGAAAT GCTTAGAAAG GTTACTTTTG
601ATCCAGAAGT ATTTTTCAAC ATATTACTTC CTCCTATCAT ATTTTATGCA GGTTATAGCC
661TGAAAAGGAG ACATTTTTTT CGAAATCTTG GGTCTATCCT AGCATACGCT TTTCTTGGAA
721CAGCAATTTC TTGTTTCGTT ATTGGGTCAA TAATGTATGG CTGTGTAACG CTGATGAAGG
781TAACGGGACA ACTTGCAGGA GATTTTTACT TTACAGATTG CCTACTGTTT GGTGCCATTG
841TATCAGCAAC TGATCCAGTG ACTGTTCTTG CTATATTCCA CGAGCTTCAA GTTGATGTTG
901AACTCTATGC ACTTCTTTTT GGTGAAAGTG TCCTCAATGA TGCTGTTGCC ATAGTGCTGT
961CCTCCTCAAT AGTGGCATAC CAGCCAGCTG GAGACAACAG TCACACCTTT GATGTCACAG
1021CGATGTTCAA GTCTATTGGG ATCTTCCTTG GAATCTTCAG TGGATCTTTT GCAATGGGTG
1081CTGCTACTGG AGTGGTGACA GCTTTAGTGA CAAAGTTCAC CAAATTACGG GAGTTCCAGT
1141TGTTGGAGAC AGGCCTGTTC TTCTTGATGT CCTGGAGTAC CTTCCTCTTG GCTGAAGCAT
1201GGGGCTTCAC AGGTGTAGTT GCAGTATTGT TTTGTGGCAT CACACAAGCA CATTATACGT
1261ATAATAATTT GTCAACGGAG TCTCAGCATA GAACTAAACA GTTGTTTGAG CTTCTCAATT
1321TCTTGGCAGA GAATTTCATC TTCTCCTACA TGGGGCTGAC ACTGTTCACC TTCCAGAACC
1381ATGTCTTTAA CCCAACATTT GTAGTAGGAG CATTTGTTGC TATTTTCTTG GGAAGAGCTG
1441CCAATATTTA CCCCTTGTCC CTCTTACTTA ATTTGGGTAG AAGAAGTAAG ATTGGATCAA
1501ATTTTCAACA CATGATGATG TTTGCTGGCC TTCGTGGTGC AATGGCATTT GCCTTGGCCA
1561TTCGAGATAC TGCCACTTAT GCACGGCAAA TGATGTTCAG CACCACGCTT CTGATTGTGT
1621TTTTTACCGT GTGGGTATTT GGTGGTGGCA CCACTGCAAT GCTGTCATGC TTGCATATCA
1681GGGTTGGTGT TGATTCAGAC CAAGAACACT TGGGTGTTCC TGAAAATGAA AGGAGAACTA
1741CCAAAGCAGA GAGTGCTTGG CTTTTCCGGA TGTGGTACAA CTTTGATCAT AACTATCTGA
1801AGCCTCTGCT GACCCACAGC GGGCCTCCGC TGACAACAAC ACTCCCTGCC TGCTGTGGAC
1861CCATCGCCAG GTGCCTCACC AGCCCCCAGG CTTACGAAAA CCAGGAACAG TTGAAAGATG
1921ATGATTCTGA TCTTATTCTC AATGATGGTG ACATCAGTTT GACATATGGA GATTCTACTG
1981TGAACACTGA ACCGGCCACA TCCAGCGCCC CAAGGAGATT TATGGGAAAC AGTTCTGAAG
2041ATGCCTTGGA TCGGGAGCTT GCATTTGGGG ACCATGAACT GGTCATTCGA GGAACACGCC
2101TGGTTCTTCC AATGGATGAT TCTGAACCCC CGCTAAATTT GTTAGATAAT ACGAGACATG
2161GTCCAGCCTA TCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
2221tttgttgcaa cgaac

Download FASTA (ORF) (Full)