Construct: ORF ccsbBroadEn_07618
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009610.1_s300c1, BRDN0000389852
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC9A6 (10479)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10479 | SLC9A6 | solute carrier family 9 mem... | NM_001042537.1 | 99.9% | 100% | 1209C>A |
| 2 | human | 10479 | SLC9A6 | solute carrier family 9 mem... | NM_006359.3 | 95.3% | 95.4% | 428_429ins96;1113C>A |
| 3 | human | 10479 | SLC9A6 | solute carrier family 9 mem... | NM_001177651.2 | 92.5% | 92.5% | 0_1ins156;1053C>A |
| 4 | human | 10479 | SLC9A6 | solute carrier family 9 mem... | XM_006724726.3 | 92.5% | 92.5% | 0_1ins156;1053C>A |
| 5 | human | 10479 | SLC9A6 | solute carrier family 9 mem... | XM_017029223.2 | 92.5% | 92.5% | 0_1ins156;1053C>A |
| 6 | human | 10479 | SLC9A6 | solute carrier family 9 mem... | XM_017029224.1 | 92.5% | 92.5% | 0_1ins156;1053C>A |
| 7 | human | 10479 | SLC9A6 | solute carrier family 9 mem... | NM_001330652.2 | 87.9% | 88% | 0_1ins156;272_273ins96;957C>A |
| 8 | human | 10479 | SLC9A6 | solute carrier family 9 mem... | XM_017029225.1 | 87.9% | 88% | 0_1ins156;272_273ins96;957C>A |
| 9 | mouse | 236794 | Slc9a6 | solute carrier family 9 (so... | NM_172780.4 | 90.5% | 96% | (many diffs) |
| 10 | mouse | 236794 | Slc9a6 | solute carrier family 9 (so... | NM_001358861.1 | 84.8% | 91.1% | (many diffs) |
| 11 | mouse | 236794 | Slc9a6 | solute carrier family 9 (so... | XM_006527980.3 | 84.8% | 91.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2169
- ORF length:
- 2103
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCGGCGCGGC TGGCGGCGGG CACCCCTCCG CCGTGGCGTC GGCAGCAGTC 121 CCCGAGCCCG CAGGCTCATG CGGCCCCTTT GGTTGCTCCT CGCAGTGGGC GTCTTTGACT 181 GGGCAGGGGC TTCGGACGGC GGCGGCGGAG AGGCTAGAGC CATGGACGAG GAGATCGTGT 241 CCGAGAAGCA AGCCGAGGAG AGCCACCGGC AGGACAGCGC CAACCTGCTC ATCTTCATCC 301 TGCTGCTCAC CCTCACCATT CTCACAATCT GGCTCTTCAA GCACCGCCGG GCCCGCTTCC 361 TGCACGAAAC CGGCCTGGCT ATGATTTATG GTCTTTTGGT GGGCCTTGTG CTTCGGTATG 421 GCATTCATGT TCCGAGTGAT GTAAATAATG TGACCCTGAG CTGTGAAGTG CAGTCAAGTC 481 CAACTACCTT ACTGGTAAAT GTTAGTGGAA AATTTTATGA GTATATGCTG AAAGGAGAGA 541 TTAGTTCACA TGAACTCAAT AATGTTCAAG ATAATGAAAT GCTTAGAAAG GTTACTTTTG 601 ATCCAGAAGT ATTTTTCAAC ATATTACTTC CTCCTATCAT ATTTTATGCA GGTTATAGCC 661 TGAAAAGGAG ACATTTTTTT CGAAATCTTG GGTCTATCCT AGCATACGCT TTTCTTGGAA 721 CAGCAATTTC TTGTTTCGTT ATTGGGTCAA TAATGTATGG CTGTGTAACG CTGATGAAGG 781 TAACGGGACA ACTTGCAGGA GATTTTTACT TTACAGATTG CCTACTGTTT GGTGCCATTG 841 TATCAGCAAC TGATCCAGTG ACTGTTCTTG CTATATTCCA CGAGCTTCAA GTTGATGTTG 901 AACTCTATGC ACTTCTTTTT GGTGAAAGTG TCCTCAATGA TGCTGTTGCC ATAGTGCTGT 961 CCTCCTCAAT AGTGGCATAC CAGCCAGCTG GAGACAACAG TCACACCTTT GATGTCACAG 1021 CGATGTTCAA GTCTATTGGG ATCTTCCTTG GAATCTTCAG TGGATCTTTT GCAATGGGTG 1081 CTGCTACTGG AGTGGTGACA GCTTTAGTGA CAAAGTTCAC CAAATTACGG GAGTTCCAGT 1141 TGTTGGAGAC AGGCCTGTTC TTCTTGATGT CCTGGAGTAC CTTCCTCTTG GCTGAAGCAT 1201 GGGGCTTCAC AGGTGTAGTT GCAGTATTGT TTTGTGGCAT CACACAAGCA CATTATACGT 1261 ATAATAATTT GTCAACGGAG TCTCAGCATA GAACTAAACA GTTGTTTGAG CTTCTCAATT 1321 TCTTGGCAGA GAATTTCATC TTCTCCTACA TGGGGCTGAC ACTGTTCACC TTCCAGAACC 1381 ATGTCTTTAA CCCAACATTT GTAGTAGGAG CATTTGTTGC TATTTTCTTG GGAAGAGCTG 1441 CCAATATTTA CCCCTTGTCC CTCTTACTTA ATTTGGGTAG AAGAAGTAAG ATTGGATCAA 1501 ATTTTCAACA CATGATGATG TTTGCTGGCC TTCGTGGTGC AATGGCATTT GCCTTGGCCA 1561 TTCGAGATAC TGCCACTTAT GCACGGCAAA TGATGTTCAG CACCACGCTT CTGATTGTGT 1621 TTTTTACCGT GTGGGTATTT GGTGGTGGCA CCACTGCAAT GCTGTCATGC TTGCATATCA 1681 GGGTTGGTGT TGATTCAGAC CAAGAACACT TGGGTGTTCC TGAAAATGAA AGGAGAACTA 1741 CCAAAGCAGA GAGTGCTTGG CTTTTCCGGA TGTGGTACAA CTTTGATCAT AACTATCTGA 1801 AGCCTCTGCT GACCCACAGC GGGCCTCCGC TGACAACAAC ACTCCCTGCC TGCTGTGGAC 1861 CCATCGCCAG GTGCCTCACC AGCCCCCAGG CTTACGAAAA CCAGGAACAG TTGAAAGATG 1921 ATGATTCTGA TCTTATTCTC AATGATGGTG ACATCAGTTT GACATATGGA GATTCTACTG 1981 TGAACACTGA ACCGGCCACA TCCAGCGCCC CAAGGAGATT TATGGGAAAC AGTTCTGAAG 2041 ATGCCTTGGA TCGGGAGCTT GCATTTGGGG ACCATGAACT GGTCATTCGA GGAACACGCC 2101 TGGTTCTTCC AATGGATGAT TCTGAACCCC CGCTAAATTT GTTAGATAAT ACGAGACATG 2161 GTCCAGCCTA TCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 2221 tttgttgcaa cgaac