Construct: ORF ccsbBroadEn_07642
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005726.1_s300c1, BRDN0000398249
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCT2 (10576)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10576 | CCT2 | chaperonin containing TCP1 ... | NM_006431.3 | 99.9% | 100% | 1533A>G |
| 2 | human | 10576 | CCT2 | chaperonin containing TCP1 ... | NM_001198842.2 | 91.1% | 91.2% | 0_1ins141;1392A>G |
| 3 | mouse | 12461 | Cct2 | chaperonin containing Tcp1,... | NM_007636.2 | 89% | 97.5% | (many diffs) |
| 4 | mouse | 12461 | Cct2 | chaperonin containing Tcp1,... | XM_006513161.2 | 89% | 97.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1674
- ORF length:
- 1605
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGTCCCTT TCCCTTGCAC CTGTTAACAT CTTTAAGGCA GGAGCTGATG 121 AAGAGAGAGC AGAGACAGCT CGTCTGACTT CTTTTATTGG TGCCATCGCC ATTGGAGACT 181 TGGTAAAGAG CACCTTGGGA CCCAAAGGCA TGGACAAAAT TCTTCTAAGC AGTGGACGAG 241 ATGCCTCTCT TATGGTAACC AATGATGGTG CCACTATTCT AAAAAACATT GGTGTTGACA 301 ATCCAGCAGC TAAAGTTTTA GTTGATATGT CAAGGGTTCA AGATGATGAA GTTGGTGATG 361 GCACTACCTC TGTTACCGTT TTAGCAGCAG AATTATTAAG GGAAGCAGAA TCTTTAATTG 421 CAAAAAAGAT TCATCCACAG ACCATCATAG CGGGTTGGAG AGAAGCCACG AAGGCTGCAA 481 GAGAGGCGCT GTTGAGTTCT GCAGTTGATC ATGGTTCCGA TGAAGTTAAA TTCCGTCAAG 541 ATTTAATGAA TATTGCGGGC ACAACATTAT CCTCAAAACT TCTTACTCAT CACAAAGACC 601 ACTTTACAAA GTTAGCTGTA GAAGCAGTTC TCAGACTGAA AGGCTCTGGC AACCTGGAGG 661 CAATTCATAT TATCAAGAAG CTAGGAGGAA GTTTGGCAGA TTCCTATTTA GATGAAGGCT 721 TCCTGTTGGA TAAAAAAATT GGAGTAAATC AACCAAAACG AATTGAAAAT GCTAAAATTC 781 TTATTGCAAA TACTGGTATG GATACAGACA AAATAAAGAT ATTTGGTTCC CGGGTAAGAG 841 TTGACTCTAC AGCAAAGGTT GCAGAAATAG AACATGCGGA AAAGGAAAAA ATGAAGGAGA 901 AAGTTGAACG TATTCTTAAG CATGGAATAA ATTGCTTTAT TAACAGGCAA TTAATTTATA 961 ATTATCCTGA ACAGCTCTTT GGTGCTGCTG GTGTCATGGC TATTGAGCAT GCAGATTTTG 1021 CAGGTGTGGA ACGCCTAGCT CTTGTCACAG GTGGTGAAAT TGCCTCTACC TTTGATCACC 1081 CAGAACTGGT GAAGCTTGGA AGTTGCAAAC TTATCGAGGA AGTCATGATT GGAGAAGACA 1141 AACTCATTCA CTTTTCTGGG GTTGCCCTTG GTGAGGCTTG TACCATTGTT TTGCGTGGTG 1201 CCACTCAACA AATTTTAGAT GAAGCAGAAA GATCATTGCA TGATGCTCTT TGTGTTCTTG 1261 CGCAAACTGT AAAGGACTCT AGAACAGTTT ATGGAGGAGG CTGTTCTGAG ATGTTGATGG 1321 CTCATGCTGT GACACAGCTT GCCAATAGAA CACCAGGCAA AGAAGCTGTT GCAATGGAGT 1381 CTTATGCTAA AGCACTGAGA ATGTTGCCAA CCATCATAGC TGACAATGCA GGCTATGACA 1441 GTGCAGACCT GGTGGCACAG CTCAGGGCTG CTCACAGTGA AGGCAATACC ACTGCTGGAT 1501 TGGATATGAG GGAAGGCACC ATTGGAGATA TGGCTATCCT GGGTATAACA GAAAGTTTTC 1561 AAGTGAAGCG ACAGGTTCTT CTGAGTGCAG CTGAAGCAGC GGAGGTGATT CTGCGTGTGG 1621 ACAACATCAT CAAAGCGGCA CCCAGGAAAC GTGTCCCTGA TCACCACCCC TGTTTGCCAA 1681 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac