Construct: ORF ccsbBroadEn_07674
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006463.1_s300c1, BRDN0000392928
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAF3IP2 (10758)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10758 | TRAF3IP2 | TRAF3 interacting protein 2 | NM_147686.4 | 99.9% | 99.8% | 969C>A |
| 2 | human | 10758 | TRAF3IP2 | TRAF3 interacting protein 2 | NM_001164281.2 | 99.7% | 99.6% | 969C>A;1359_1360insAAG |
| 3 | human | 10758 | TRAF3IP2 | TRAF3 interacting protein 2 | NM_147200.3 | 98.3% | 98.2% | 1_27del;996C>A |
| 4 | human | 10758 | TRAF3IP2 | TRAF3 interacting protein 2 | NM_001164283.3 | 19.2% | 19.2% | 0_1ins1368 |
| 5 | mouse | 103213 | Traf3ip2 | TRAF3 interacting protein 2 | NM_134000.3 | 82.7% | 78.7% | (many diffs) |
| 6 | mouse | 103213 | Traf3ip2 | TRAF3 interacting protein 2 | XM_011243105.1 | 78.8% | 75.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1761
- ORF length:
- 1695
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CCGAAGCATT CCTGTGGAGG TTGATGAATC AGAACCATAC CCAAGTCAGT 121 TGCTGAAACC AATCCCAGAA TATTCCCCGG AAGAGGAATC AGAACCACCT GCTCCAAATA 181 TAAGGAACAT GGCACCCAAC AGCTTGTCTG CACCCACAAT GCTTCACAAT TCCTCCGGAG 241 ACTTTTCTCA AGCTCACTCA ACCCTGAAAC TTGCAAATCA CCAGCGGCCT GTATCCCGGC 301 AGGTCACCTG CCTGCGCACT CAAGTTCTGG AGGACAGTGA AGACAGTTTC TGCAGGAGAC 361 ACCCAGGCCT GGGCAAAGCT TTCCCTTCTG GGTGCTCTGC AGTCAGCGAG CCTGCGTCTG 421 AGTCTGTGGT TGGAGCCCTC CCTGCAGAGC ATCAGTTTTC ATTTATGGAA AAACGTAATC 481 AATGGCTGGT ATCTCAGCTT TCAGCGGCTT CTCCTGACAC TGGCCATGAC TCAGACAAAT 541 CAGACCAAAG TTTACCTAAT GCCTCAGCAG ACTCCTTGGG CGGTAGCCAG GAGATGGTGC 601 AACGGCCCCA GCCTCACAGG AACCGAGCAG GCCTGGATCT GCCAACCATA GACACGGGAT 661 ATGATTCCCA GCCCCAGGAT GTCCTGGGCA TCAGGCAGCT GGAAAGGCCC CTGCCCCTCA 721 CCTCCGTGTG TTACCCCCAG GACCTCCCCA GACCTCTCAG GTCCAGGGAG TTCCCTCAGT 781 TTGAACCTCA GAGGTATCCA GCATGTGCAC AGATGCTGCC TCCCAATCTT TCCCCACATG 841 CTCCATGGAA CTATCATTAC CATTGTCCTG GAAGTCCCGA TCACCAGGTG CCATATGGCC 901 ATGACTACCC TCGAGCAGCC TACCAGCAAG TGATCCAGCC GGCTCTGCCT GGGCAGCCCC 961 TGCCTGGAGC CAGTGTGAGA GGCCTGCACC CTGTGCAGAA GGTTATCCTG AATTATCCCA 1021 GCCCCTGGGA CCAAGAAGAG AGGCCCGCAC AGAGAGACTG CTCCTTTCCG GGGCTTCCAA 1081 GGCACCAGGA CCAGCCACAT CACCAGCCAC CTAATAGAGC TGGTGCTCCT GGGGAGTCCT 1141 TGGAGTGCCC TGCAGAGCTG AGACCACAGG TTCCCCAGCC TCCGTCCCCA GCTGCTGTGC 1201 CTAGACCCCC TAGCAACCCT CCAGCCAGAG GAACTCTAAA AACAAGCAAT TTGCCAGAAG 1261 AATTGCGGAA AGTCTTTATC ACTTATTCGA TGGACACAGC TATGGAGGTG GTGAAATTCG 1321 TGAACTTTTT GTTGGTAAAT GGCTTCCAAA CTGCAATTGA CATATTTGAG GATAGAATCC 1381 GAGGCATTGA TATCATTAAA TGGATGGAGC GCTACCTTAG GGATAAGACC GTGATGATAA 1441 TCGTAGCAAT CAGCCCCAAA TACAAACAGG ACGTGGAAGG CGCTGAGTCG CAGCTGGACG 1501 AGGATGAGCA TGGCTTACAT ACTAAGTACA TTCATCGAAT GATGCAGATT GAGTTCATAA 1561 AACAAGGAAG CATGAATTTC AGATTCATCC CTGTGCTCTT CCCAAATGCT AAGAAGGAGC 1621 ATGTGCCCAC CTGGCTTCAG AACACTCATG TCTACAGCTG GCCCAAGAAT AAAAAAAACA 1681 TCCTGCTGCG GCTGCTGAGA GAGGAAGAGT ATGTGGCTCC TCCACGGGGG CCTCTGCCCA 1741 CCCTTCAGGT GGTTCCCTTG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1801 attgcttatc aatttgttgc aacgaac