Construct: ORF ccsbBroadEn_07691

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006471.1_s300c1, BRDN0000457173
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPP1R13L (10848)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10848 PPP1R13L protein phosphatase 1 regul... NM_001142502.2 99.9% 99.8% 592C>T
2 human 10848 PPP1R13L protein phosphatase 1 regul... NM_006663.4 99.9% 99.8% 592C>T
3 human 10848 PPP1R13L protein phosphatase 1 regul... XM_017026177.1 99.9% 99.8% 592C>T
4 human 10848 PPP1R13L protein phosphatase 1 regul... XM_017026178.1 99.9% 99.8% 592C>T
5 human 10848 PPP1R13L protein phosphatase 1 regul... XM_017026179.1 73.5% 73.3% (many diffs)
6 mouse 333654 Ppp1r13l protein phosphatase 1, regu... NM_001010836.3 82.3% 88.1% (many diffs)
7 mouse 333654 Ppp1r13l protein phosphatase 1, regu... XM_006540126.1 82.3% 88.1% (many diffs)
8 mouse 333654 Ppp1r13l protein phosphatase 1, regu... XM_006540127.3 82.3% 88.1% (many diffs)
9 mouse 333654 Ppp1r13l protein phosphatase 1, regu... XM_006540128.2 82.3% 88.1% (many diffs)
10 mouse 333654 Ppp1r13l protein phosphatase 1, regu... XM_006540129.1 82.3% 88.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2550
ORF length:
2484
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CAGCGAGGCA TTCCAGAGCG CGCGGGACTT TCTGGACATG AACTTCCAGT
121CGCTGGCCAT GAAACACATG GATCTGAAGC AGATGGAGCT GGACACGGCG GCGGCCAAGG
181TGGATGAACT GACCAAGCAG CTGGAGTCGC TGTGGTCAGA CTCTCCCGCG CCTCCTGGCC
241CGCAGGCCGG ACCCCCTTCT AGGCCGCCCC GGTACAGCTC CAGCTCGATC CCTGAGCCCT
301TCGGCAGCCG AGGGTCCCCC CGGAAGGCGG CCACCGACGG CGCAGACACC CCGTTCGGAC
361GATCAGAGAG TGCCCCAACC CTACACCCCT ACAGCCCGCT GTCCCCCAAG GGACGGCCGT
421CGTCGCCGCG CACCCCGCTC TACCTGCAGC CGGACGCCTA CGGCAGCCTG GACCGCGCGA
481CCTCGCCCCG GCCCCGCGCC TTCGATGGCG CAGGCAGCTC CCTCGGCCGT GCGCCCTCCC
541CGCGGCCCGG GCCAGGCCCG CTCCGCCAGC AGGGTCCCCC CACGCCTTTC GACTTCCTGG
601GCCGCGCAGG CTCCCCCCGC GGCAGCCCCC TGGCGGAGGG GCCCCAGGCC TTCTTCTCCG
661AGCGTGGGCC GTCACCGCGC CCCCCTGCCA CAGCCTACGA CGCGCCAGCG TCCGCCTTCG
721GGAGCTCCCT GCTAGGCTCC GGCGGCAGCG CATTCGCCCC GCCTCTGCGC GCGCAAGACG
781ACCTGACGCT GCGCCGGCGG CCTCCGAAAG CCTGGAACGA GTCTGACCTG GACGTGGCGT
841ACGAGAAGAA GCCTTCGCAG ACAGCGAGCT ATGAACGCCT GGACGTCTTC GCAAGGCCTG
901CCTCGCCGAG CCTGCAGCTG TTGCCTTGGA GGGAGAGCAG CCTGGATGGA CTGGGGGGCA
961CCGGCAAGGA CAACCTCACT AGCGCCACCC TGCCGCGCAA TTACAAGGTC TCTCCTCTGG
1021CCAGCGACCG GCGTTCAGAC GCGGGCAGCT ACCGGCGCTC GCTGGGCTCC GCGGGGCCGT
1081CGGGCACTTT GCCTCGCAGC TGGCAGCCCG TCAGCCGCAT CCCCATGCCC CCCTCCAGCC
1141CCCAGCCCCG CGGGGCCCCG CGCCAGCGTC CCATCCCCCT CAGCATGATC TTCAAGCTGC
1201AGAACGCCTT CTGGGAGCAC GGGGCCAGCC GCGCCATGCT CCCTGGGTCC CCCCTCTTCA
1261CCCGAGCACC CCCGCCTAAG CTGCAGCCCC AACCACAACC ACAGCCCCAG CCACAATCAC
1321AACCACAGCC CCAGCTGCCC CCACAGCCCC AGACCCAACC CCAAACCCCT ACCCCAGCCC
1381CCCAGCATCC CCAACAGACA TGGCCCCCTG TGAACGAAGG ACCCCCCAAA CCCCCCACCG
1441AGCTGGAGCC TGAGCCGGAG ATAGAGGGGC TGCTGACACC AGTGCTGGAG GCTGGCGATG
1501TGGATGAAGG CCCTGTAGCA AGGCCTCTCA GCCCCACGAG GCTGCAGCCA GCACTGCCAC
1561CGGAGGCACA GTCGGTGCCC GAGCTGGAGG AGGTGGCACG GGTGTTGGCG GAAATTCCCC
1621GGCCCCTCAA ACGCAGGGGC TCCATGGAGC AGGCCCCTGC TGTGGCCCTG CCCCCTACCC
1681ACAAGAAACA GTACCAGCAG ATCATCAGCC GCCTCTTCCA TCGTCATGGG GGGCCAGGGC
1741CCGGGGGGCC GGAGCCAGAG CTGTCCCCCA TCACTGAGGG ATCTGAGGCC AGGGCAGGGC
1801CCCCTGCTCC TGCCCCACCA GCTCCCATTC CACCCCCGGC CCCGTCCCAG AGCAGCCCAC
1861CAGAGCAGCC GCAGAGCATG GAGATGCGCT CTGTGCTGCG GAAGGCGGGC TCCCCGCGCA
1921AGGCCCGCCG CGCGCGCCTC AACCCTCTGG TGCTCCTCCT GGACGCGGCG CTGACCGGGG
1981AGCTGGAGGT GGTGCAGCAG GCGGTGAAGG AGATGAACGA CCCGAGCCAG CCCAACGAGG
2041AGGGCATCAC TGCCTTGCAC AACGCCATCT GCGGCGCCAA CTACTCTATC GTGGATTTCC
2101TCATCACCGC GGGTGCCAAT GTCAACTCCC CCGACAGCCA CGGCTGGACA CCCTTGCACT
2161GCGCGGCGTC GTGCAACGAC ACAGTCATCT GCATGGCGCT GGTGCAGCAC GGCGCTGCAA
2221TCTTCGCCAC CACGCTCAGC GACGGCGCCA CCGCCTTCGA GAAGTGCGAC CCTTACCGCG
2281AGGGTTATGC TGACTGCGCC ACCTACCTGG CAGACGTCGA GCAGAGTATG GGGCTGATGA
2341ACAGCGGGGC AGTGTACGCT CTCTGGGACT ACAGCGCCGA GTTCGGGGAC GAGCTGTCCT
2401TCCGCGAGGG CGAGTCGGTC ACCGTGCTGC GGAGGGACGG GCCGGAGGAG ACCGACTGGT
2461GGTGGGCCGC GCTGCACGGC CAGGAGGGCT ACGTGCCGCG GAACTACTTC GGGCTGTTCC
2521CCAGGGTGAA GCCTCAAAGG AGTAAAGTCT ACCCAACTTT CTTGTACAAA GTTGGcatta
2581taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)