Construct: ORF ccsbBroadEn_07728

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005324.1_s300c1, BRDN0000392918
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TDRKH (11022)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11022 TDRKH tudor and KH domain containing NM_001083963.1 99.8% 99.6% 61C>T;770G>C
2 human 11022 TDRKH tudor and KH domain containing NM_001083965.2 99.8% 99.6% 61C>T;770G>C
3 human 11022 TDRKH tudor and KH domain containing NM_006862.4 99.8% 99.6% 61C>T;770G>C
4 human 11022 TDRKH tudor and KH domain containing XM_017000122.2 99.8% 99.6% 61C>T;770G>C
5 human 11022 TDRKH tudor and KH domain containing XM_017000123.2 99.8% 99.6% 61C>T;770G>C
6 human 11022 TDRKH tudor and KH domain containing XM_017000124.1 99.8% 99.6% 61C>T;770G>C
7 human 11022 TDRKH tudor and KH domain containing XM_017000125.1 99.8% 99.6% 61C>T;770G>C
8 human 11022 TDRKH tudor and KH domain containing XM_017000126.1 99.8% 99.6% 61C>T;770G>C
9 human 11022 TDRKH tudor and KH domain containing XM_017000127.1 99.8% 99.6% 61C>T;770G>C
10 human 11022 TDRKH tudor and KH domain containing NM_001083964.1 91.8% 91.6% 61C>T;319_320ins135;635G>C
11 human 11022 TDRKH tudor and KH domain containing XM_005244856.4 60% 59.8% 0_1ins672;98G>C
12 human 11022 TDRKH tudor and KH domain containing XM_017000128.1 60% 59.8% 0_1ins672;98G>C
13 human 11022 TDRKH tudor and KH domain containing XM_017000129.2 60% 59.8% 0_1ins672;98G>C
14 human 11022 TDRKH tudor and KH domain containing XM_017000130.2 60% 59.8% 0_1ins672;98G>C
15 mouse 72634 Tdrkh tudor and KH domain contain... NM_028307.1 89.6% 90.9% (many diffs)
16 mouse 72634 Tdrkh tudor and KH domain contain... XM_006502138.3 89.6% 90.9% (many diffs)
17 mouse 72634 Tdrkh tudor and KH domain contain... XM_017319746.1 89.6% 90.9% (many diffs)
18 mouse 72634 Tdrkh tudor and KH domain contain... XM_017319744.1 89% 90.2% (many diffs)
19 mouse 72634 Tdrkh tudor and KH domain contain... XM_017319745.1 89% 90.2% (many diffs)
20 mouse 72634 Tdrkh tudor and KH domain contain... XM_017319749.1 50.2% 48.8% (many diffs)
21 mouse 72634 Tdrkh tudor and KH domain contain... XM_017319747.1 49.8% 48.4% (many diffs)
22 mouse 72634 Tdrkh tudor and KH domain contain... XM_017319748.1 49.8% 48.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1749
ORF length:
1683
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC TACTGAACGG ACTTCTTGGA CAAGCCTGTC CACCATTCAG AAAATAGCCC
121TGGGCTTTGG GATCCCAGCC AGTGCAACAG TTGCCTATAT CCTATACCGC AGGTATAGGG
181AAAGCAGAGA AGAGCGGCTG ACATTTGTTG GGGAAGATGA CATTGAGATA GAGATGCGGG
241TTCCCCAGGA GGCTGTGAAA CTCATCATTG GCCGGCAAGG AGCCAATATT AAACAGCTGC
301GGAAACAGAC AGGTGCTCGG ATTGATGTGG ACACAGAGGA TGTAGGCGAT GAGCGAGTGC
361TGCTTATCAG TGGTTTTCCT GTTCAGGTGT GCAAGGCCAA AGCAGCAATC CATCAGATCC
421TGACAGAGAA TACCCCAGTG TCTGAGCAGC TTTCAGTTCC CCAGAGATCT GTGGGCAGAA
481TCATAGGGAG AGGCGGCGAG ACAATTCGTT CTATCTGTAA GGCATCTGGA GCCAAAATTA
541CCTGTGACAA AGAATCAGAA GGGACATTAC TACTATCAAG ACTTATAAAA ATCTCAGGAA
601CACAGAAGGA AGTGGCAGCA GCCAAGCATT TGATACTGGA GAAAGTTTCA GAAGATGAAG
661AACTTCGGAA GAGAATTGCT CATTCTGCAG AAACCAGGGT CCCACGCAAA CAGCCAATCA
721GTGTGAGAAG AGAAGACATG ACAGAGCCAG GTGGAGCTGG AGAGCCAGCA TTATGGAAAA
781ACACCAGTTC TAGCATGGAG CCGACTGCAC CCCTGGTGAC TCCTCCACCC AAAGCAGGAG
841GCGACATGGC TGTGGTAGTG TCAAAGGAAG GTTCCTGGGA GAAACCTAGT GATGACAGCT
901TTCAGAAGTC TGAAGCCCAG GCCATCCCAG AGATGCCCAT GTTTGAAATC CCCAGTCCTG
961ACTTCAGTTT TCATGCTGAT GAGTACCTAG AAGTCTACGT TTCTGCTTCT GAGCACCCTA
1021ACCACTTCTG GATCCAGATC GTTGGCTCCC GCAGCCTGCA ATTGGATAAG CTTGTCAATG
1081AGATGACCCA GCACTATGAG AATAGTGTGC CTGAAGACTT GACTGTGCAT GTAGGAGACA
1141TTGTAGCAGC ACCTTTACCT ACAAATGGTT CCTGGTATCG AGCCCGGGTC CTCGGCACCT
1201TGGAGAATGG GAACTTGGAC CTCTATTTTG TTGACTTTGG AGATAATGGA GATTGCCCAC
1261TGAAGGACCT CAGGGCTCTC AGGAGTGACT TCCTAAGCCT TCCATTTCAA GCAATAGAAT
1321GTAGTCTGGC ACGGATTGCT CCCTCAGGTG ACCAGTGGGA AGAGGAAGCT TTGGATGAGT
1381TTGATAGACT CACTCATTGT GCTGACTGGA AGCCTCTGGT AGCCAAGATC TCTAGCTATG
1441TCCAGACTGG GATCTCAACT TGGCCAAAGA TCTACTTATA TGATACTAGC AATGGGAAGA
1501AACTTGATAT TGGGCTAGAA TTAGTACACA AAGGATACGC AATTGAGCTT CCTGAAGACA
1561TAGAAGAAAA CAGAGCTGTC CCAGACATGT TGAAGGACAT GGCCACAGAA ACAGATGCCT
1621CTCTCAGCAC GTTGCTCACT GAGACCAAAA AGAGCTCTGG AGAGATAACA CATACCCTGT
1681CCTGCCTCAG CTTATCAGAA GCTGCTTCCA TGTCTGGTGA TGATAACCTT GAAGATGACT
1741ACTTACTCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1801tttgttgcaa cgaac

Download FASTA (ORF) (Full)