Construct: ORF ccsbBroadEn_07728
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005324.1_s300c1, BRDN0000392918
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TDRKH (11022)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11022 | TDRKH | tudor and KH domain containing | NM_001083963.1 | 99.8% | 99.6% | 61C>T;770G>C |
| 2 | human | 11022 | TDRKH | tudor and KH domain containing | NM_001083965.2 | 99.8% | 99.6% | 61C>T;770G>C |
| 3 | human | 11022 | TDRKH | tudor and KH domain containing | NM_006862.4 | 99.8% | 99.6% | 61C>T;770G>C |
| 4 | human | 11022 | TDRKH | tudor and KH domain containing | XM_017000122.2 | 99.8% | 99.6% | 61C>T;770G>C |
| 5 | human | 11022 | TDRKH | tudor and KH domain containing | XM_017000123.2 | 99.8% | 99.6% | 61C>T;770G>C |
| 6 | human | 11022 | TDRKH | tudor and KH domain containing | XM_017000124.1 | 99.8% | 99.6% | 61C>T;770G>C |
| 7 | human | 11022 | TDRKH | tudor and KH domain containing | XM_017000125.1 | 99.8% | 99.6% | 61C>T;770G>C |
| 8 | human | 11022 | TDRKH | tudor and KH domain containing | XM_017000126.1 | 99.8% | 99.6% | 61C>T;770G>C |
| 9 | human | 11022 | TDRKH | tudor and KH domain containing | XM_017000127.1 | 99.8% | 99.6% | 61C>T;770G>C |
| 10 | human | 11022 | TDRKH | tudor and KH domain containing | NM_001083964.1 | 91.8% | 91.6% | 61C>T;319_320ins135;635G>C |
| 11 | human | 11022 | TDRKH | tudor and KH domain containing | XM_005244856.4 | 60% | 59.8% | 0_1ins672;98G>C |
| 12 | human | 11022 | TDRKH | tudor and KH domain containing | XM_017000128.1 | 60% | 59.8% | 0_1ins672;98G>C |
| 13 | human | 11022 | TDRKH | tudor and KH domain containing | XM_017000129.2 | 60% | 59.8% | 0_1ins672;98G>C |
| 14 | human | 11022 | TDRKH | tudor and KH domain containing | XM_017000130.2 | 60% | 59.8% | 0_1ins672;98G>C |
| 15 | mouse | 72634 | Tdrkh | tudor and KH domain contain... | NM_028307.1 | 89.6% | 90.9% | (many diffs) |
| 16 | mouse | 72634 | Tdrkh | tudor and KH domain contain... | XM_006502138.3 | 89.6% | 90.9% | (many diffs) |
| 17 | mouse | 72634 | Tdrkh | tudor and KH domain contain... | XM_017319746.1 | 89.6% | 90.9% | (many diffs) |
| 18 | mouse | 72634 | Tdrkh | tudor and KH domain contain... | XM_017319744.1 | 89% | 90.2% | (many diffs) |
| 19 | mouse | 72634 | Tdrkh | tudor and KH domain contain... | XM_017319745.1 | 89% | 90.2% | (many diffs) |
| 20 | mouse | 72634 | Tdrkh | tudor and KH domain contain... | XM_017319749.1 | 50.2% | 48.8% | (many diffs) |
| 21 | mouse | 72634 | Tdrkh | tudor and KH domain contain... | XM_017319747.1 | 49.8% | 48.4% | (many diffs) |
| 22 | mouse | 72634 | Tdrkh | tudor and KH domain contain... | XM_017319748.1 | 49.8% | 48.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1749
- ORF length:
- 1683
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TACTGAACGG ACTTCTTGGA CAAGCCTGTC CACCATTCAG AAAATAGCCC 121 TGGGCTTTGG GATCCCAGCC AGTGCAACAG TTGCCTATAT CCTATACCGC AGGTATAGGG 181 AAAGCAGAGA AGAGCGGCTG ACATTTGTTG GGGAAGATGA CATTGAGATA GAGATGCGGG 241 TTCCCCAGGA GGCTGTGAAA CTCATCATTG GCCGGCAAGG AGCCAATATT AAACAGCTGC 301 GGAAACAGAC AGGTGCTCGG ATTGATGTGG ACACAGAGGA TGTAGGCGAT GAGCGAGTGC 361 TGCTTATCAG TGGTTTTCCT GTTCAGGTGT GCAAGGCCAA AGCAGCAATC CATCAGATCC 421 TGACAGAGAA TACCCCAGTG TCTGAGCAGC TTTCAGTTCC CCAGAGATCT GTGGGCAGAA 481 TCATAGGGAG AGGCGGCGAG ACAATTCGTT CTATCTGTAA GGCATCTGGA GCCAAAATTA 541 CCTGTGACAA AGAATCAGAA GGGACATTAC TACTATCAAG ACTTATAAAA ATCTCAGGAA 601 CACAGAAGGA AGTGGCAGCA GCCAAGCATT TGATACTGGA GAAAGTTTCA GAAGATGAAG 661 AACTTCGGAA GAGAATTGCT CATTCTGCAG AAACCAGGGT CCCACGCAAA CAGCCAATCA 721 GTGTGAGAAG AGAAGACATG ACAGAGCCAG GTGGAGCTGG AGAGCCAGCA TTATGGAAAA 781 ACACCAGTTC TAGCATGGAG CCGACTGCAC CCCTGGTGAC TCCTCCACCC AAAGCAGGAG 841 GCGACATGGC TGTGGTAGTG TCAAAGGAAG GTTCCTGGGA GAAACCTAGT GATGACAGCT 901 TTCAGAAGTC TGAAGCCCAG GCCATCCCAG AGATGCCCAT GTTTGAAATC CCCAGTCCTG 961 ACTTCAGTTT TCATGCTGAT GAGTACCTAG AAGTCTACGT TTCTGCTTCT GAGCACCCTA 1021 ACCACTTCTG GATCCAGATC GTTGGCTCCC GCAGCCTGCA ATTGGATAAG CTTGTCAATG 1081 AGATGACCCA GCACTATGAG AATAGTGTGC CTGAAGACTT GACTGTGCAT GTAGGAGACA 1141 TTGTAGCAGC ACCTTTACCT ACAAATGGTT CCTGGTATCG AGCCCGGGTC CTCGGCACCT 1201 TGGAGAATGG GAACTTGGAC CTCTATTTTG TTGACTTTGG AGATAATGGA GATTGCCCAC 1261 TGAAGGACCT CAGGGCTCTC AGGAGTGACT TCCTAAGCCT TCCATTTCAA GCAATAGAAT 1321 GTAGTCTGGC ACGGATTGCT CCCTCAGGTG ACCAGTGGGA AGAGGAAGCT TTGGATGAGT 1381 TTGATAGACT CACTCATTGT GCTGACTGGA AGCCTCTGGT AGCCAAGATC TCTAGCTATG 1441 TCCAGACTGG GATCTCAACT TGGCCAAAGA TCTACTTATA TGATACTAGC AATGGGAAGA 1501 AACTTGATAT TGGGCTAGAA TTAGTACACA AAGGATACGC AATTGAGCTT CCTGAAGACA 1561 TAGAAGAAAA CAGAGCTGTC CCAGACATGT TGAAGGACAT GGCCACAGAA ACAGATGCCT 1621 CTCTCAGCAC GTTGCTCACT GAGACCAAAA AGAGCTCTGG AGAGATAACA CATACCCTGT 1681 CCTGCCTCAG CTTATCAGAA GCTGCTTCCA TGTCTGGTGA TGATAACCTT GAAGATGACT 1741 ACTTACTCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1801 tttgttgcaa cgaac