Construct: ORF ccsbBroadEn_07738
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015441.1_s300c1, BRDN0000392723
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ABHD2 (11057)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11057 | ABHD2 | abhydrolase domain containi... | NM_007011.8 | 99.9% | 99.7% | 758G>A |
| 2 | human | 11057 | ABHD2 | abhydrolase domain containi... | NM_152924.5 | 99.9% | 99.7% | 758G>A |
| 3 | human | 11057 | ABHD2 | abhydrolase domain containi... | XM_005254832.2 | 99.9% | 99.7% | 758G>A |
| 4 | human | 11057 | ABHD2 | abhydrolase domain containi... | XM_005254833.2 | 99.9% | 99.7% | 758G>A |
| 5 | human | 11057 | ABHD2 | abhydrolase domain containi... | XM_011521165.2 | 99.9% | 99.7% | 758G>A |
| 6 | human | 11057 | ABHD2 | abhydrolase domain containi... | XM_024449829.1 | 99.9% | 99.7% | 758G>A |
| 7 | human | 11057 | ABHD2 | abhydrolase domain containi... | XM_024449830.1 | 99.9% | 99.7% | 758G>A |
| 8 | human | 11057 | ABHD2 | abhydrolase domain containi... | XM_024449831.1 | 99.9% | 99.7% | 758G>A |
| 9 | human | 11057 | ABHD2 | abhydrolase domain containi... | XM_024449832.1 | 99.9% | 99.7% | 758G>A |
| 10 | human | 11057 | ABHD2 | abhydrolase domain containi... | XM_024449834.1 | 99.9% | 99.7% | 758G>A |
| 11 | mouse | 54608 | Abhd2 | abhydrolase domain containi... | NM_018811.6 | 91.5% | 98.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1341
- ORF length:
- 1275
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TGCCATGCTG GAGACTCCCG AACTCCCAGC CGTGTTTGAT GGAGTGAAGC 121 TGGCTGCAGT GGCTGCTGTG CTGTACGTGA TCGTCCGGTG TTTGAACCTG AAGAGCCCCA 181 CAGCCCCACC TGACCTCTAC TTCCAGGACT CGGGGCTCTC ACGCTTTCTG CTCAAGTCCT 241 GTCCTCTTCT GACCAAAGAA TACATTCCAC CGTTGATCTG GGGGAAAAGT GGACACATCC 301 AGACAGCCTT GTATGGGAAG ATGGGAAGGG TGAGGTCGCC ACATCCTTAT GGGCACCGGA 361 AGTTCATCAC TATGTCTGAT GGAGCCACTT CTACATTCGA CCTCTTCGAG CCCTTGGCTG 421 AGCACTGTGT TGGAGATGAT ATCACCATGG TCATCTGCCC TGGAATTGCC AATCACAGCG 481 AGAAGCAATA CATCCGCACT TTCGTTGACT ACGCCCAGAA AAATGGCTAT CGGTGCGCCG 541 TGCTGAACCA CCTGGGTGCC CTGCCCAACA TTGAATTGAC CTCGCCACGC ATGTTCACCT 601 ATGGCTGCAC GTGGGAATTT GGAGCCATGG TGAACTACAT CAAGAAGACA TATCCCCTGA 661 CCCAGCTGGT CGTCGTGGGC TTCAGCCTGG GTGGTAACAT TGTGTGCAAA TACTTGGGGG 721 AGACTCAGGC AAACCAAGAG AAGGTCCTGT GCTGCGTCAG CGTGTGCCAG GGGTACAGTG 781 CACTGAGGGC CCAGGAAACC TTCATGCAAT GGGATCAGTG CCAGCGGTTC TACAACTTCC 841 TCATGGCTGA CAACATGAAG AAGATCATCC TCTCGCACAG GCAAGCTCTT TTTGGAGACC 901 ATGTTAAGAA ACCCCAGAGC CTGGAAGACA CGGACTTGAG CCGGCTCTAC ACAGCAACAT 961 CCCTGATGCA GATTGATGAC AATGTGATGA GGAAGTTTCA CGGCTATAAC TCCCTGAAGG 1021 AATACTATGA GGAAGAAAGT TGCATGCGGT ACCTGCACAG GATTTATGTT CCTCTCATGC 1081 TGGTTAATGC AGCTGACGAT CCGTTGGTGC ATGAAAGTCT TCTAACCATT CCAAAATCTC 1141 TTTCAGAGAA ACGAGAGAAC GTCATGTTTG TGCTGCCTCT GCATGGGGGC CACTTGGGCT 1201 TCTTTGAGGG CTCTGTGCTG TTCCCCGAGC CCCTGACATG GATGGATAAG CTGGTGGTGG 1261 AGTACGCCAA CGCCATTTGC CAATGGGAGC GTAACAAGTT GCAGTGCTCT GACACGGAGC 1321 AGGTGGAGGC CGACCTGGAG CGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1381 attgcttatc aatttgttgc aacgaac