Construct: ORF ccsbBroadEn_07830

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001421.1_s300c1, BRDN0000393843
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMCC1 (23023)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23023 TMCC1 transmembrane and coiled-co... NM_001017395.5 99.9% 99.8% 493A>G
2 human 23023 TMCC1 transmembrane and coiled-co... NM_001349263.2 99.9% 99.8% 493A>G
3 human 23023 TMCC1 transmembrane and coiled-co... NM_001349264.2 99.9% 99.8% 493A>G
4 human 23023 TMCC1 transmembrane and coiled-co... NM_001349265.2 99.9% 99.8% 493A>G
5 human 23023 TMCC1 transmembrane and coiled-co... NM_001349266.2 99.9% 99.8% 493A>G
6 human 23023 TMCC1 transmembrane and coiled-co... NM_001349268.2 99.9% 99.8% 493A>G
7 human 23023 TMCC1 transmembrane and coiled-co... XM_006713544.1 99.9% 99.8% 493A>G
8 human 23023 TMCC1 transmembrane and coiled-co... XM_011512573.2 99.9% 99.8% 493A>G
9 human 23023 TMCC1 transmembrane and coiled-co... XM_017005931.1 99.9% 99.8% 493A>G
10 human 23023 TMCC1 transmembrane and coiled-co... XM_017005933.1 99.9% 99.8% 493A>G
11 human 23023 TMCC1 transmembrane and coiled-co... NM_001128224.2 82.4% 82.3% 0_1ins342;151A>G
12 human 23023 TMCC1 transmembrane and coiled-co... NM_001349269.2 82.4% 82.3% 0_1ins342;151A>G
13 human 23023 TMCC1 transmembrane and coiled-co... NM_001349270.2 82.4% 82.3% 0_1ins342;151A>G
14 human 23023 TMCC1 transmembrane and coiled-co... XM_011512580.2 82.4% 82.3% 0_1ins342;151A>G
15 human 23023 TMCC1 transmembrane and coiled-co... XM_017005934.1 82.4% 82.3% 0_1ins342;151A>G
16 human 23023 TMCC1 transmembrane and coiled-co... XM_017005935.1 82.4% 82.3% 0_1ins342;151A>G
17 human 23023 TMCC1 transmembrane and coiled-co... XM_017005937.1 82.4% 82.3% 0_1ins342;151A>G
18 human 23023 TMCC1 transmembrane and coiled-co... XM_017005938.1 82.4% 82.3% 0_1ins342;151A>G
19 human 23023 TMCC1 transmembrane and coiled-co... XM_017005939.1 82.4% 82.3% 0_1ins342;151A>G
20 human 23023 TMCC1 transmembrane and coiled-co... XM_024453406.1 82.4% 82.3% 0_1ins342;151A>G
21 human 23023 TMCC1 transmembrane and coiled-co... NM_001349271.2 78.1% 69.7% (many diffs)
22 human 23023 TMCC1 transmembrane and coiled-co... NM_001349272.1 71.9% 71.2% (many diffs)
23 human 23023 TMCC1 transmembrane and coiled-co... NM_001349273.2 71.4% 69.7% (many diffs)
24 human 23023 TMCC1 transmembrane and coiled-co... NM_001349275.2 70.8% 70.5% 1_2delATins562;5_6insCTGCGGAGCG
25 human 23023 TMCC1 transmembrane and coiled-co... NM_001349276.2 70.8% 70.5% 1_2delATins562;5_6insCTGCGGAGCG
26 human 23023 TMCC1 transmembrane and coiled-co... XM_011512583.2 70.8% 70.5% 1_2delATins562;5_6insCTGCGGAGCG
27 human 23023 TMCC1 transmembrane and coiled-co... XM_024453407.1 70.8% 70.5% 1_2delATins562;5_6insCTGCGGAGCG
28 human 23023 TMCC1 transmembrane and coiled-co... NM_001349274.2 70.7% 70.7% (many diffs)
29 human 23023 TMCC1 transmembrane and coiled-co... NM_015008.5 50.3% 50.3% 0_1ins972
30 mouse 330401 Tmcc1 transmembrane and coiled co... NM_177412.1 90.4% 95.4% (many diffs)
31 mouse 330401 Tmcc1 transmembrane and coiled co... XM_006506308.3 90.4% 95.4% (many diffs)
32 mouse 330401 Tmcc1 transmembrane and coiled co... XM_030255484.1 90.4% 95.4% (many diffs)
33 mouse 330401 Tmcc1 transmembrane and coiled co... XM_030255485.1 90.4% 95.4% (many diffs)
34 mouse 330401 Tmcc1 transmembrane and coiled co... XM_030255486.1 84.7% 89.3% (many diffs)
35 mouse 330401 Tmcc1 transmembrane and coiled co... XM_006506309.2 74.1% 78.8% (many diffs)
36 mouse 330401 Tmcc1 transmembrane and coiled co... XM_006506310.1 65.1% 68.4% (many diffs)
37 mouse 330401 Tmcc1 transmembrane and coiled co... XM_006506312.3 64.6% 69.5% (many diffs)
38 mouse 330401 Tmcc1 transmembrane and coiled co... XM_006506311.4 64.1% 69.3% (many diffs)
39 mouse 330401 Tmcc1 transmembrane and coiled co... NM_001364577.1 45.7% 49.3% (many diffs)
40 mouse 330401 Tmcc1 transmembrane and coiled co... XM_017321657.2 45.7% 49.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2025
ORF length:
1959
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GCCTTCGGGC AGTGAACAGT TATTTGAGGA CCCTGATCCT GGAGGCAAAT
121CCCAAGATGC AGAGGCCAGA AAGCAGACAG AATCAGAACA AAAATTGTCT AAAATGACCC
181ACAATGCTTT GGAGAACATT AACGTGATTG GCCAAGGCTT GAAGCATCTC TTCCAGCACC
241AGCGCAGGAG GTCATCAGTG TCTCCACATG ATGTGCAGCA AATTCAGGCA GATCCAGAAC
301CTGAAATGGA TCTGGAAAGC CAGAACGCAT GTGCTGAGAT TGATGGTGTC CCCACCCACC
361CCACAGCTCT GAATCGTGTC CTGCAGCAGA TTCGAGTGCC ACCCAAGATG AAGAGAGGGA
421CAAGCTTGCA TAGTAGGCGG GGCAAGCCAG AGGCCCCAAA GGGAAGTCCC CAAATCAACA
481GGAAGTCTGG TCAGGAGATG ACAGCTGTTA TGCAGTCAGG CCGACCCAGG TCTTCATCCA
541CAACTGATGC ACCTACCGGC TCTGCTATGA TGGAAATAGC TTGTGCTGCT GCTGCTGCTG
601CTGCTGCATG TCTACCAGGA GAGGAGGGAA CTGCGGAGCG GATCGAACGG TTGGAAGTAA
661GCAGCCTTGC CCAAACATCC AGTGCAGTGG CCTCCAGTAC CGATGGCAGC ATCCACACAG
721ACTCTGTGGA TGGAACACCA GACCCTCAGC GCACAAAGGC TGCCATTGCT CACCTGCAGC
781AGAAGATCCT GAAGCTCACA GAACAAATCA AGATTGCACA AACAGCCCGG GACGACAACG
841TTGCTGAATA CTTGAAGCTT GCCAACAGTG CAGACAAACA GCAGGCTGCC CGCATCAAGC
901AAGTCTTTGA GAAGAAGAAC CAGAAATCTG CCCAAACTAT CCTCCAGCTG CAAAAGAAAC
961TTGAGCACTA CCACAGGAAG CTCAGAGAGG TAGAGCAGAA TGGGATCCCC CGGCAGCCAA
1021AGGATGTCTT CAGGGACATG CACCAGGGTC TGAAGGATGT AGGAGCAAAG GTGACTGGCT
1081TCAGTGAAGG TGTGGTGGAT AGTGTCAAAG GTGGGTTTTC CAGCTTCTCC CAGGCCACCC
1141ATTCAGCAGC AGGCGCTGTA GTCTCAAAGC CCAGAGAGAT TGCCTCACTC ATTCGGAACA
1201AATTTGGCAG TGCAGACAAC ATCCCCAACC TGAAGGACTC TTTAGAGGAA GGGCAAGTGG
1261ATGATGCGGG GAAGGCTTTG GGAGTGATTT CAAACTTTCA GTCTAGCCCA AAATATGGTA
1321GTGAAGAAGA TTGTTCTAGT GCCACTTCAG GCTCAGTGGG AGCCAACAGC ACCACAGGGG
1381GCATCGCTGT AGGAGCATCC AGCTCCAAAA CAAACACCCT GGACATGCAG AGCTCAGGAT
1441TTGATGCACT ACTACATGAG ATCCAGGAGA TCCGGGAAAC CCAGGCCAGA CTAGAGGAAT
1501CCTTTGAGAC TCTCAAGGAA CATTATCAGA GGGACTATTC CTTAATAATG CAGACCTTAC
1561AGGAGGAGCG ATATAGATGT GAACGATTGG AAGAACAGCT AAATGACCTA ACAGAGCTCC
1621ACCAGAATGA AATCTTGAAC TTGAAGCAGG AACTGGCAAG CATGGAAGAA AAAATCGCGT
1681ATCAGTCCTA TGAACGGGCC CGGGACATCC AGGAGGCCCT GGAGGCATGC CAGACGCGCA
1741TCTCCAAGAT GGAGCTGCAG CAGCAGCAGC AGCAGGTGGT GCAGCTAGAA GGGCTGGAGA
1801ATGCCACTGC CCGGAACCTT CTGGGCAAAC TCATCAACAT CCTCCTGGCT GTCATGGCAG
1861TCCTTTTGGT CTTTGTCTCC ACTGTAGCCA ACTGTGTGGT CCCCCTCATG AAGACTCGCA
1921ACAGGACGTT CAGCACTTTA TTCCTTGTGG TTTTTATTGC CTTTCTCTGG AAGCACTGGG
1981ACGCCCTCTT CAGCTATGTG GAACGGTTCT TTTCATCCCC TAGATGCCCA ACTTTCTTGT
2041ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)