Construct: ORF ccsbBroadEn_07847

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017810.1_s300c1, BRDN0000457293
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZCCHC14 (23174)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23174 ZCCHC14 zinc finger CCHC-type conta... XM_005255858.3 97.4% 97% (many diffs)
2 human 23174 ZCCHC14 zinc finger CCHC-type conta... XM_017023082.2 92.8% 92% (many diffs)
3 human 23174 ZCCHC14 zinc finger CCHC-type conta... NM_015144.3 87.3% 87.2% 1_411del;2274C>T;2488G>A
4 human 23174 ZCCHC14 zinc finger CCHC-type conta... XR_243401.3 44.1% (many diffs)
5 human 23174 ZCCHC14 zinc finger CCHC-type conta... XM_011522964.2 36.4% 33.7% 1_411del;1475_1476ins128;1599_1600ins1531
6 mouse 142682 Zcchc14 zinc finger, CCHC domain co... NM_080855.2 83.7% 85.5% (many diffs)
7 mouse 142682 Zcchc14 zinc finger, CCHC domain co... XM_006530667.3 72% 73.2% (many diffs)
8 mouse 142682 Zcchc14 zinc finger, CCHC domain co... XM_017312569.1 31.7% 32.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2916
ORF length:
2847
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCTCCAAC CACCCGGCCT TCAGCTTCCA CCAGAAGCAG GTGCTGCGCC
121AGGAGCTCAC GCAGATCCAG AGCAGCCTGA ACGGCGGCGG GGGCCACGGC GGCAAGGGCG
181CGCCCGGGCC GGGCGGCGCG CTGCCCACTT GCCCAGCCTG CCACAAGATC ACTCCAAGAA
241CTGAGGCCCC TGTCAGCAGT GTCAGTAATA GTTTGGAGAA TGCCCTGCAC ACATCAGCAC
301ATTCCACGGA GGAGTCGCTG CCCAAGAGGC CCTTAGGAAA ACACAGCAAA GTGAGTGTTG
361AAAAGATAGA CCTGAAGGGA TTATCACACA CAAAAAATGA CAGAAATGTT GAATGTTCCT
421TTGAGGTCTT GTGGTCTGAT TCTTCAATAA CATCAGTAAC CAAATCTTCC TCTGAAGTGA
481CGGAATTTAT TTCAAAGCTA TGTCAGCTCT ATCCTGAAGA GAACTTGGAG AAACTCATTC
541CTTGCTTAGC TGGTCCGGAC GCATTTTATG TGGAGCGAAA CCACGTGGAT CTGGACTCAG
601GCCTGAGGTA CCTGGCCTCA TTACCTTCTC ACGTGTTGAA AAATGACCAT GTCAGGAGGT
661TTCTCAGCAC TTCCTCTCCC CCACAGCAGC TTCAGAGTCC AAGTCCTGGC AATCCCTCCC
721TTTCTAAAGT AGGTACCGTG ATGGGCGTGT CTGGAAGGCC TGTGTGTGGA GTGGCTGGTA
781TCCCGTCCTC GCAGAGCGGA GCCCAGCACC ACGGGCAGCA CCCGGCCGGC TCCGCCGCCC
841CCTTGCCTCA CTGCTCCCAT GCGGGCAGCG CGGGCTCAGC CCTGGCCTAC CGGACCCAGA
901TGGACACATC ACCTGCCATC CTCATGCCTT CCAGTCTGCA GACCCCTCAG ACCCAGGAGC
961AGAATGGGAT TCTAGACTGG CTTAGGAAAC TGCGTTTGCA CAAGTATTAC CCCGTCTTTA
1021AGCAGCTCTC CATGGAGAAG TTTTTGAGCC TTACTGAAGA AGATCTGAAT AAATTTGAGT
1081CTCTTACCAT GGGGGCAAAG AAGAAGCTCA AGACCCAGCT GGAGCTGGAA AAGGAGAAGT
1141CAGAGAGACG GTGCCTGAAC CCCTCGGCCC CGCCGCTGGT CACCAGCAGT GGTGTGGCTC
1201GAGTGCCCCC CACCAGCCAC GTCGGGCCCG TGCAGTCGGG GCGGGGCAGC CATGCAGCAG
1261AGCTGCGGGT GGAAGTGGAG CAGCCCCATC ACCAGCTGCC CCGGGAAGGC AGTTCCTCGG
1321AGTACTCCAG CTCCTCCTCC AGCCCCATGG GGGTACAGGC CCGGGAAGAG AGCTCCGACA
1381GCGCTGAGGA GAATGACAGA CGTGTGGAGA TTCACTTGGA GAGCTCTGAC AAGGAGAAGC
1441CGGTGATGCT GCTGAATCAC TTCACTTCCA GTTCCGCCAG ACCCACGGCC CAGGTTCTCC
1501CTGTGCAGAA TGAGGCCAGC TCCAATCCAT CAGGCCACCA CCCCCTGCCC CCGCAGATGC
1561TGAGCGCAGC CTCACACATC ACACCCATCC GCATGCTGAA TTCCGTGCAC AAGCCGGAAA
1621GAGGGAGCGC GGACATGAAG CTCCTCTCGT CTTCTGTGCA CTCACTTTTG TCTCTAGAAG
1681AAAGGAATAA AGGATCTGGA CCAAGAAGCA GCATGAAAGT GGACAAGAGC TTTGGCAGCG
1741CCATGATGGA CGTGCTGCCC GCGTCCGCAC CCCACCAGCC TGTGCAGGTC CTCTCTGGGC
1801TTTCGGAGAG CAGCTCCATG TCACCCACAG TCTCCTTTGG TCCCCGGACC AAAGTCGTGC
1861ATGCATCCAC GCTGGACAGG GTGCTGAAGA CAGCACAGCA ACCGGCCCTG GTCGTGGAGA
1921CCAGCACGGC TGCCACGGGG ACGCCCAGCA CAGTCCTCCA CGCCGCCCGT CCGCCCATCA
1981AACTGCTGCT GTCGTCATCT GTTCCTGCTG ATTCTGCCAT TTCTGGGCAA ACTTCCTGTC
2041CTAATAATGT GCAAATAAGT GTGCCCCCTG CAATAATAAA CCCCCGGACT GCTCTGTACA
2101CAGCCAACAC CAAAGTTGCC TTTTCTGCAA TGAGCAGTAT GCCAATGGGC CCCCTGCAGG
2161GTGGCTTCTG TGCAAACAGC AACACTGCCT CTCCCAGCAG CCACCCCTCC ACGTCCTTTG
2221CCAACATGGC CACGTTGCCC AGCTGCCCAG CCCCCAGCTC CAGCCCGGCG CTGTCCTCCG
2281TCCCTGAAAG CAGTTTCTAT AGCAGCAGTG GCGGTGGCGG CTCCACAGGA AACATTCCTG
2341CCTCGAATCC GAACCACCAC CACCACCACC ACCATCAGCA GCCCCCGGCA CCCCCGCAGC
2401CCGCCCCACC CCCGCCAGGC TGCATTGTGT GCACGTCCTG TGGCTGCAGC GGCAGCTGCG
2461GCTCGAGTGG CCTGACTGTC AGCTACGCCA ACTACTTCCA GCACCCGTTC TCCGGTCCGT
2521CCGTGTTCAC CTTCCCCTTC TTGCCCTTCA GTCCCATGTG CAGCAGCGGC TACGTCAGCG
2581CCCAGCAGTA CGGCGGCGGC TCCACCTTCC CCGTCGTGCA CGCCCCTTAC AGCAGCAGCG
2641GGACCCCAGA CCCTGTCCTG AGTGGGCAGT CCACGTTTGC CGTGCCACCC ATGCAGAACT
2701TCATGGCAGG GACAGCAGGG GTGTACCAGA CCCAAGGACT GGTGGGCAGT AGCAATGGTT
2761CCAGTCACAA AAAGAGCGGG AACCTATCTT GTTACAACTG CGGGGCCACT GGTCACCGCG
2821CCCAGGACTG CAAACAGCCG TCCATGGACT TCAACCGGCC AGGTACTTTT AGGTTGAAAT
2881ACGCCCCTCC AGCAGAAAGT CTGGACTCCA CAGATTTGCC AACTTTCTTG TACAAAGTTG
2941Gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

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