Construct: ORF ccsbBroadEn_07871
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010844.1_s300c1, BRDN0000389824
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LARP1 (23367)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_015315.5 | 99.9% | 100% | 1521T>C |
| 2 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367717.1 | 97.4% | 97.3% | 760_761ins78;1443T>C |
| 3 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_011537616.1 | 95.5% | 93.1% | (many diffs) |
| 4 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_011537617.1 | 94% | 93.1% | (many diffs) |
| 5 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_006714775.2 | 93.5% | 93.4% | (many diffs) |
| 6 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_033551.3 | 90.9% | 88.4% | (many diffs) |
| 7 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_011537614.1 | 88.5% | 86% | (many diffs) |
| 8 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367718.1 | 87.9% | 85.4% | (many diffs) |
| 9 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367713.1 | 87.4% | 87.4% | 0_1ins384;1137T>C |
| 10 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367714.1 | 87.4% | 87.4% | 0_1ins384;1137T>C |
| 11 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367719.1 | 87.4% | 87.4% | 0_1ins384;1137T>C |
| 12 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_005268408.3 | 87.4% | 87.4% | 0_1ins384;1137T>C |
| 13 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_011537615.1 | 84.8% | 82.3% | (many diffs) |
| 14 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367716.1 | 84.1% | 84.2% | 0_1ins384;354_355ins99;1038T>C |
| 15 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367715.1 | 80.8% | 80.7% | 0_1ins384;253_254ins201;936T>C |
| 16 | mouse | 73158 | Larp1 | La ribonucleoprotein domain... | NM_028451.1 | 83% | 86.3% | (many diffs) |
| 17 | mouse | 73158 | Larp1 | La ribonucleoprotein domain... | XM_006534334.2 | 81.7% | 82.4% | (many diffs) |
| 18 | mouse | 73158 | Larp1 | La ribonucleoprotein domain... | XM_011249280.2 | 78.6% | 83.1% | (many diffs) |
| 19 | mouse | 73158 | Larp1 | La ribonucleoprotein domain... | XM_017314797.1 | 78.6% | 83.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3123
- ORF length:
- 3057
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT TTGGAGGGTG CTTTTGTCAA AGAGGCCTCC TTTCCCTCAC CCAGAGCTGG 121 ATTTCCAAGA GGCTCCCATA CCTAGCTGCC CTGGCAGACT CCCAGGGAGG AAAAACAGCG 181 TGGCCTTGGC AGCTGCCCCG AGGAAGGAGC CCACAGGTGA CAGGGAGAAG CCATTGCCAT 241 TCCCTGTCCT GGCCCCCTTC AGCAACCCTG AACACTCTGC TCCAGCCAAG GTGGTGAGGG 301 CAGCTGTTCC TAAACAGCGC AAAGGCAGCA AGGTTGGTGA CTTTGGAGAT GCAATCAATT 361 GGCCCACACC TGGAGAGATA GCCCACAAGA GTGTTCAGCC ACAGTCCCAC AAGCCTCAGC 421 CTACCCGTAA ACTGCCACCC AAGAAGGACA TGAAGGAACA GGAGAAAGGA GAAGGGAGTG 481 ATAGTAAGGA GAGTCCAAAA ACCAAATCAG ATGAATCAGG GGAGGAAAAG AATGGAGATG 541 AGGATTGCCA GCGAGGCGGG CAGAAGAAGA AAGGAAACAA ACACAAGTGG GTTCCATTAC 601 AAATAGACAT GAAGCCTGAA GTGCCCAGAG AGAAACTGGC TTCACGCCCC ACTCGCCCAC 661 CGGAGCCTAG ACACATACCT GCCAATCGCG GAGAGATCAA AGGGTCTGAG TCTGCCACCT 721 ACGTGCCCGT GGCCCCCCCC ACCCCAGCCT GGCAACCAGA GATCAAACCG GAGCCTGCCT 781 GGCACGACCA GGATGAGACA TCGAGTGTGA AGAGTGATGG GGCTGGTGGG GCGCGGGCTT 841 CCTTCCGTGG CCGTGGACGG GGGCGTGGTC GCGGCCGGGG ACGCGGCCGG GGTGGCACTC 901 GAACCCATTT TGACTACCAG TTTGGCTACC GAAAGTTTGA TGGTGTGGAG GGGCCTCGTA 961 CGCCCAAGTA CATGAACAAC ATCACCTACT ACTTTGACAA TGTCAGCAGC ACCGAGCTTT 1021 ACAGTGTGGA TCAGGAACTG CTCAAAGACT ACATCAAGCG CCAGATTGAA TACTACTTCA 1081 GCGTGGACAA TTTAGAGCGA GACTTCTTCC TGCGAAGGAA AATGGATGCT GATGGTTTCC 1141 TACCCATCAC CCTTATTGCT TCCTTCCACC GAGTGCAGGC CCTTACCACT GACATTTCAC 1201 TCATCTTTGC GGCCCTAAAG GACAGCAAGG TGGTGGAGAT CGTTGATGAG AAAGTTCGTA 1261 GGAGGGAGGA ACCAGAAAAG TGGCCTCTTC CCCCAATAGT GGATTATTCA CAGACTGATT 1321 TCTCCCAGCT TCTCAACTGC CCTGAATTTG TTCCCCGTCA GCACTACCAA AAGGAGACAG 1381 AGTCGGCACC TGGCTCTCCT CGTGCAGTCA CCCCAGTGCC AACCAAAACA GAGGAGGTCA 1441 GCAACCTAAA GACACTACCC AAGGGCCTGT CTGCCAGCCT GCCTGACCTG GATTCTGAGA 1501 ACTGGATTGA AGTGAAGAAG AGGCCTCGGC CATCCCCAGC ACGGCCCAAG AAGTCAGAGG 1561 AGTCCAGATT TTCCCACCTG ACCTCCCTGC CTCAGCAGCT GCCTTCCCAG CAGCTGATGT 1621 CCAAGGATCA GGATGAGCAA GAGGAACTGG ATTTTCTGTT TGACGAGGAG ATGGAGCAGA 1681 TGGATGGGCG GAAGAACACC TTCACTGCCT GGTCTGATGA GGAATCTGAC TATGAGATTG 1741 ATGACAGGGA TGTCAACAAG ATCCTCATTG TCACCCAGAC ACCACATTAC ATGCGCCGGC 1801 ACCCAGGGGG GGACCGCACA GGCAACCACA CCTCGCGTGC CAAGATGAGC GCCGAACTGG 1861 CCAAGGTCAT TAATGATGGC CTCTTCTACT ATGAGCAGGA CCTGTGGGCT GAAAAGTTTG 1921 AACCTGAGTA TTCCCAGATC AAGCAAGAAG TCGAGAACTT CAAAAAGGTC AATATGATCA 1981 GCCGGGAGCA GTTTGACACA CTGACCCCTG AGCCCCCTGT GGATCCCAAC CAGGAAGTTC 2041 CTCCTGGGCC ACCTCGGTTC CAGCAAGTTC CTACGGATGC CCTGGCCAAC AAGTTGTTTG 2101 GTGCTCCTGA GCCCTCCACC ATCGCCCGCT CTCTACCAAC CACTGTCCCA GAGTCACCAA 2161 ACTACCGCAA CACCAGGACC CCTCGCACTC CCCGGACACC ACAGCTCAAA GACTCAAGCC 2221 AGACATCACG GTTTTACCCA GTGGTGAAAG AAGGACGGAC ACTGGATGCC AAGATGCCTC 2281 GAAAAAGAAA GACAAGACAC AGTTCAAACC CACCCTTGGA GAGCCATGTG GGCTGGGTGA 2341 TGGATTCCCG TGAGCACAGG CCCCGTACTG CTTCCATCAG CTCCAGCCCC TCAGAAGGGA 2401 CGCCTACAGT TGGCAGCTAT GGCTGTACCC CTCAGTCATT GCCCAAGTTC CAGCATCCTT 2461 CCCATGAACT GCTCAAGGAA AATGGCTTCA CACAACACGT CTACCATAAG TATCGTAGGC 2521 GCTGCCTTAA TGAGCGGAAA CGCTTGGGCA TTGGCCAGTC TCAGGAGATG AACACACTCT 2581 TCCGCTTCTG GTCCTTCTTC CTCCGAGATC ACTTCAACAA AAAGATGTAT GAGGAGTTCA 2641 AGCAGCTGGC TCTGGAGGAC GCCAAAGAAG GCTACAGATA TGGTTTGGAG TGCCTTTTTC 2701 GATACTACAG TTATGGCCTG GAAAAGAAGT TCCGGCTGGA CATATTCAAG GATTTTCAGG 2761 AGGAAACGGT GAAGGACTAT GAAGCTGGCC AACTGTATGG GCTGGAGAAG TTCTGGGCCT 2821 TCTTGAAATA TTCCAAAGCC AAAAATTTGG ACATTGACCC CAAACTGCAA GAATACCTCG 2881 GCAAATTCCG ACGTCTTGAA GACTTCCGAG TAGATCCCCC CATGGGTGAG GAGGGCAACC 2941 ACAAGCGACA CTCAGTGGTA GCAGGAGGTG GCGGCGGTGA GGGCAGGAAG CGGTGCCCCT 3001 CCCAGTCTTC CAGCAGGCCT GCTGCCATGA TCAGCCAACC CCCTACACCA CCCACCGGCC 3061 AGCCTGTCCG GGAAGATGCC AAATGGACAA GCCAGCACTC GAACACACAG ACTTTGGGAA 3121 AGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 3181 gcaacgaac