Transcript: Mouse XM_006534334.2

PREDICTED: Mus musculus La ribonucleoprotein domain family, member 1 (Larp1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Larp1 (73158)
Length:
6556
CDS:
12..3287

Additional Resources:

NCBI RefSeq record:
XM_006534334.2
NBCI Gene record:
Larp1 (73158)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006534334.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000346243 CAAGAATACCTCGGCAAATTC pLKO_005 3033 CDS 100% 13.200 18.480 N Larp1 n/a
2 TRCN0000152891 GCAAGAATACCTCGGCAAATT pLKO.1 3032 CDS 100% 13.200 18.480 N LARP1 n/a
3 TRCN0000281136 GCAAGAATACCTCGGCAAATT pLKO_005 3032 CDS 100% 13.200 18.480 N LARP1 n/a
4 TRCN0000346303 TGTATACCATTTGGGCTATTA pLKO_005 3419 3UTR 100% 13.200 18.480 N Larp1 n/a
5 TRCN0000150575 GCTGGACATATTCAAGGATTT pLKO.1 2900 CDS 100% 10.800 15.120 N LARP1 n/a
6 TRCN0000281135 GCTGGACATATTCAAGGATTT pLKO_005 2900 CDS 100% 10.800 15.120 N LARP1 n/a
7 TRCN0000376352 TAGACATGAAGCCCGAAGTAC pLKO_005 757 CDS 100% 4.950 6.930 N Larp1 n/a
8 TRCN0000154155 CAAACACAAGTGGGTTCCATT pLKO.1 731 CDS 100% 4.950 3.960 N LARP1 n/a
9 TRCN0000376353 AGTTTGGCTACCGAAAGTTTG pLKO_005 1078 CDS 100% 10.800 7.560 N Larp1 n/a
10 TRCN0000346302 CACTCGGACACACTGACTTTG pLKO_005 3258 CDS 100% 10.800 7.560 N Larp1 n/a
11 TRCN0000346301 GAGTCTCCAAACTACCGAAAT pLKO_005 2316 CDS 100% 10.800 7.560 N Larp1 n/a
12 TRCN0000376351 GGACAGACCTAGAGTACTAAG pLKO_005 3373 3UTR 100% 10.800 7.560 N Larp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006534334.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07871 pDONR223 100% 81.7% 82.4% None (many diffs) n/a
2 ccsbBroad304_07871 pLX_304 0% 81.7% 82.4% V5 (many diffs) n/a
3 TRCN0000479074 AGATGCCACCCACATCGATAAGCA pLX_317 13.3% 81.7% 82.4% V5 (many diffs) n/a
4 ccsbBroadEn_14080 pDONR223 100% 23.5% 24.7% None (many diffs) n/a
5 ccsbBroad304_14080 pLX_304 0% 23.5% 24.7% V5 (many diffs) n/a
6 TRCN0000473104 ATTGCCCCCTGCTCGATCTAATCG pLX_317 61.2% 23.5% 24.7% V5 (many diffs) n/a
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