Construct: ORF ccsbBroadEn_07929

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009566.1_s300c1, BRDN0000388453
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPIL2 (23759)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23759 PPIL2 peptidylprolyl isomerase li... NM_148176.2 99.9% 100% 711C>T
2 human 23759 PPIL2 peptidylprolyl isomerase li... NM_001317996.1 98.1% 93.2% 711C>T;1467_1470delGAAG;1560_1561ins25
3 human 23759 PPIL2 peptidylprolyl isomerase li... NM_014337.4 98.1% 93.2% 711C>T;1467_1470delGAAG;1560_1561ins25
4 human 23759 PPIL2 peptidylprolyl isomerase li... NM_148175.3 98.1% 93.2% 711C>T;1467_1470delGAAG;1560_1561ins25
5 human 23759 PPIL2 peptidylprolyl isomerase li... XM_005261448.4 98.1% 93.2% 711C>T;1467_1470delGAAG;1560_1561ins25
6 human 23759 PPIL2 peptidylprolyl isomerase li... XM_011530046.3 98.1% 93.2% 711C>T;1467_1470delGAAG;1560_1561ins25
7 human 23759 PPIL2 peptidylprolyl isomerase li... XM_011530047.3 98.1% 93.2% 711C>T;1467_1470delGAAG;1560_1561ins25
8 human 23759 PPIL2 peptidylprolyl isomerase li... XM_011530044.3 96.3% 96.6% (many diffs)
9 human 23759 PPIL2 peptidylprolyl isomerase li... XM_011530043.3 91.7% 91.7% 711C>T;1561_1562insGCAG;1578_1713del
10 human 23759 PPIL2 peptidylprolyl isomerase li... XM_011530042.3 91.4% 91.9% (many diffs)
11 human 23759 PPIL2 peptidylprolyl isomerase li... XM_011530041.3 85.3% 84.9% (many diffs)
12 human 23759 PPIL2 peptidylprolyl isomerase li... XM_024452193.1 77.2% 73.1% (many diffs)
13 human 23759 PPIL2 peptidylprolyl isomerase li... XM_011530049.2 56.4% 56% (many diffs)
14 human 23759 PPIL2 peptidylprolyl isomerase li... XM_011530050.2 56.4% 56% (many diffs)
15 human 23759 PPIL2 peptidylprolyl isomerase li... XM_011530051.2 56.4% 56% (many diffs)
16 human 23759 PPIL2 peptidylprolyl isomerase li... XM_017028706.2 50% 45.3% 0_1ins762;705_708delGAAG;798_799ins25
17 human 23759 PPIL2 peptidylprolyl isomerase li... XM_017028705.1 44.1% 43.6% (many diffs)
18 mouse 66053 Ppil2 peptidylprolyl isomerase (c... NM_001252444.1 84.4% 85% (many diffs)
19 mouse 66053 Ppil2 peptidylprolyl isomerase (c... NM_001252445.1 84.4% 85% (many diffs)
20 mouse 66053 Ppil2 peptidylprolyl isomerase (c... NM_144954.3 84.4% 85% (many diffs)
21 mouse 66053 Ppil2 peptidylprolyl isomerase (c... XM_006522447.3 80.6% 82.9% (many diffs)
22 mouse 66053 Ppil2 peptidylprolyl isomerase (c... XM_006522443.3 79.4% 79.7% (many diffs)
23 mouse 66053 Ppil2 peptidylprolyl isomerase (c... XM_006522444.3 55.4% 54.6% (many diffs)
24 mouse 66053 Ppil2 peptidylprolyl isomerase (c... XM_006522445.3 55.4% 54.6% (many diffs)
25 mouse 66053 Ppil2 peptidylprolyl isomerase (c... XM_006522446.3 55.4% 54.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1647
ORF length:
1581
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GAAGCGACAG CACCAAAAGG ACAAAATGTA CATTACCTGT GCTGAATACA
121CTCACTTTTA TGGTGGCAAG AAGCCAGATC TCCCACAAAC AAATTTTCGT CGTTTACCTT
181TTGACCACTG CAGTCTCTCT CTGCAGCCCT TTGTCTACCC AGTCTGCACT CCCGATGGCA
241TCGTCTTTGA CTTACTGAAC ATTGTTCCAT GGCTTAAGAA GTACGGGACC AACCCCAGCA
301ATGGAGAGAA GCTGGACGGG AGGTCCCTGA TCAAGCTGAA CTTTTCCAAG AACAGTGAGG
361GGAAGTACCA CTGCCCAGTG CTGTTTACCG TGTTCACCAA CAACACCCAC ATCGTGGCTG
421TGAGGACGAC CGGCAACGTC TACGCCTATG AGGCAGTGGA ACAGCTAAAT ATCAAGGCCA
481AGAACTTCCG GGACCTGCTG ACCGACGAGC CCTTCTCCCG GCAGGACATC ATCACCCTCC
541AGGACCCCAC CAATTTGGAC AAGTTCAATG TCTCTAACTT CTATCATGTG AAGAATAACA
601TGAAAATAAT AGACCCAGAT GAAGAGAAGG CCAAACAGGA CCCGTCTTAT TATCTGAAAA
661ATACAAATGC CGAGACCCGA GAGACCCTGC AGGAGCTCTA CAAGGAGTTC AAAGGGGACG
721AGATTCTGGC AGCCACCATG AAGGCCCCGG AGAAGAAGAA AGTGGACAAG CTGAATGCTG
781CCCACTATTC CACAGGGAAG GTCAGCGCTT CCTTCACCTC CACCGCGATG GTCCCGGAGA
841CCACACATGA AGCAGCTGCC ATCGACGAGG ATGTGCTGCG CTACCAGTTT GTGAAGAAGA
901AGGGCTACGT GCGGCTGCAC ACCAACAAGG GCGACCTCAA CCTGGAGCTG CACTGCGACC
961TGACACCAAA AACCTGCGAA AACTTCATCA GGCTTTGCAA GAAGCATTAT TACGATGGCA
1021CCATCTTCCA CAGATCCATC CGGAACTTTG TGATCCAAGG GGGCGACCCC ACAGGCACAG
1081GCACGGGTGG GGAGTCATAC TGGGGGAAGC CCTTCAAAGA CGAGTTCCGG CCCAACCTCT
1141CGCACACGGG CCGCGGCATC CTCAGCATGG CCAACTCCGG GCCCAACAGC AACAGGTCTC
1201AATTCTTCAT CACGTTTCGC TCCTGTGCCT ACCTGGACAA GAAGCATACC ATCTTTGGAC
1261GGGTTGTTGG GGGCTTTGAC GTACTGACAG CCATGGAGAA TGTGGAGAGT GACCCCAAAA
1321CTGACCGCCC TAAGGAGGAG ATCCGCATTG ATGCCACTAC AGTGTTCGTG GACCCCTATG
1381AGGAGGCCGA TGCCCAGATT GCGCAGGAGC GGAAGACACA GCTCAAGGTA GCCCCGGAGA
1441CCAAAGTGAA GAGCAGCCAG CCCCAGGCAG GGAGCCAGGG CCCCCAGACC TTCCGCCAGG
1501GCGTGGGCAA GTACATCAAC CCAGCAGCCA CCGAGCAGCA GAGGAAGAGC CCTCAACCAG
1561TGCCACTGTC CCCATGTCCA AGAAGAAGCC CAGTCGGGGT TTTGGGGACT TCAGCTCCTG
1621GTAGCAGCAG GCTGCCTGAT GACCACTACC CAACTTTCTT GTACAAAGTt ggcattataa
1681gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)