Construct: ORF ccsbBroadEn_07987

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005386.1_s300c1, BRDN0000391133
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABHD12 (26090)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26090 ABHD12 abhydrolase domain containi... NM_015600.5 99.9% 100% 837C>T
2 human 26090 ABHD12 abhydrolase domain containi... NM_001042472.3 96.5% 96.2% (many diffs)
3 human 26090 ABHD12 abhydrolase domain containi... XM_011529214.2 95.8% 95.5% (many diffs)
4 human 26090 ABHD12 abhydrolase domain containi... XM_017027796.1 57.8% 57.4% (many diffs)
5 human 26090 ABHD12 abhydrolase domain containi... XM_017027797.2 49% 48.5% (many diffs)
6 human 26090 ABHD12 abhydrolase domain containi... XR_002958465.1 37.9% (many diffs)
7 human 26090 ABHD12 abhydrolase domain containi... XR_002958466.1 36.4% (many diffs)
8 human 26090 ABHD12 abhydrolase domain containi... XR_002958467.1 27.8% (many diffs)
9 mouse 76192 Abhd12 abhydrolase domain containi... NM_024465.3 86.2% 89.8% (many diffs)
10 mouse 76192 Abhd12 abhydrolase domain containi... XM_006500365.3 72.6% 76.6% (many diffs)
11 mouse 76192 Abhd12 abhydrolase domain containi... XM_006500366.3 51.6% 55.6% (many diffs)
12 mouse 76192 Abhd12 abhydrolase domain containi... XM_006500367.3 51.6% 55.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1278
ORF length:
1212
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG GAAGCGGACC GAGCCCGTCG CCTTGGAGCA TGAGCGCTGC GCCGCCGCGG
121GCTCGTCCTC CTCCGGCTCG GCCGCCGCGG CGCTGGACGC CGACTGCCGC CTGAAGCAGA
181ACCTACGCCT GACGGGCCCG GCGGCGGCTG AGCCGCGCTG CGCAGCCGAC GCGGGAATGA
241AGCGGGCGCT GGGCAGGCGA AAGGGCGTGT GGTTGCGCCT GAGGAAGATA CTTTTCTGTG
301TTTTGGGGTT GTACATTGCC ATTCCATTTC TCATCAAACT ATGTCCTGGA ATACAGGCCA
361AACTGATTTT CTTGAATTTC GTAAGAGTTC CCTATTTCAT TGATTTGAAA AAACCACAGG
421ATCAAGGTTT GAATCACACG TGTAACTACT ACCTGCAGCC AGAGGAAGAC GTGACCATTG
481GAGTCTGGCA CACCGTCCCT GCAGTCTGGT GGAAGAACGC CCAAGGCAAA GACCAGATGT
541GGTATGAGGA TGCCTTGGCT TCCAGCCACC CTATCATTCT GTACCTGCAT GGGAACGCAG
601GTACCAGAGG AGGCGACCAC CGCGTGGAGC TTTACAAGGT GCTGAGTTCC CTTGGTTACC
661ATGTGGTCAC CTTTGACTAC AGAGGTTGGG GTGACTCAGT GGGAACGCCA TCTGAGCGGG
721GCATGACCTA TGACGCACTC CACGTTTTTG ACTGGATCAA AGCAAGAAGT GGTGACAACC
781CCGTGTACAT CTGGGGCCAC TCTCTGGGCA CTGGCGTGGC GACAAATCTG GTGCGGCGCC
841TCTGTGAGCG AGAGACGCCT CCAGATGCCC TTATATTGGA ATCTCCATTC ACTAATATCC
901GTGAAGAAGC TAAGAGCCAT CCATTTTCAG TGATATATCG ATACTTCCCT GGGTTTGACT
961GGTTCTTCCT TGATCCTATT ACAAGTAGTG GAATTAAATT TGCAAATGAT GAAAACGTGA
1021AGCACATCTC CTGTCCCCTG CTCATCCTGC ACGCTGAGGA CGACCCGGTG GTGCCCTTCC
1081AGCTTGGCAG AAAGCTCTAT AGCATCGCCG CACCAGCTCG AAGCTTCCGA GATTTCAAAG
1141TTCAGTTTGT GCCCTTTCAT TCAGACCTTG GCTACAGGCA CAAATACATT TACAAGAGCC
1201CTGAGCTGCC ACGGATACTG AGACCTCAGC AGGGCCCAGG TTCCAGCCCA GATCCCAGCA
1261TGTGGTCAGA GCTGGTGTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1321gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)