Transcript: Human XR_002958466.1

PREDICTED: Homo sapiens abhydrolase domain containing 12 (ABHD12), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ABHD12 (26090)
Length:
3161
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002958466.1
NBCI Gene record:
ABHD12 (26090)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002958466.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416678 CTATTACAAGTAGTGGAATTA pLKO_005 1041 3UTR 100% 13.200 18.480 N ABHD12 n/a
2 TRCN0000423847 GAAGCTAAGAGCCATCCATTT pLKO_005 971 3UTR 100% 10.800 15.120 N ABHD12 n/a
3 TRCN0000075290 CCTTGGCTACAGGCACAAATA pLKO.1 2434 3UTR 100% 13.200 9.240 N ABHD12 n/a
4 TRCN0000430696 GAATACAGGCCAAACTGATTT pLKO_005 294 3UTR 100% 13.200 9.240 N ABHD12 n/a
5 TRCN0000075292 CAGGCACAAATACATTTACAA pLKO.1 2443 3UTR 100% 5.625 3.938 N ABHD12 n/a
6 TRCN0000075289 CCACAGGATCAAGGTTTGAAT pLKO.1 479 3UTR 100% 5.625 3.938 N ABHD12 n/a
7 TRCN0000075291 CCCTTATATTGGAATCTCCAT pLKO.1 933 3UTR 100% 2.640 1.848 N ABHD12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002958466.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07987 pDONR223 100% 36.4% None (many diffs) n/a
2 ccsbBroad304_07987 pLX_304 0% 36.4% V5 (many diffs) n/a
3 TRCN0000470607 TTTACCTCTATATTCTTCCGTACC pLX_317 29.3% 36.4% V5 (many diffs) n/a
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