Construct: ORF ccsbBroadEn_07993

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005707.1_s300c1, BRDN0000392988
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZBTB20 (26137)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001164343.2 99.9% 99.8% 1409C>T
2 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001164344.3 99.9% 99.8% 1409C>T
3 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001164345.3 99.9% 99.8% 1409C>T
4 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001164346.2 99.9% 99.8% 1409C>T
5 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001164347.2 99.9% 99.8% 1409C>T
6 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001348801.2 99.9% 99.8% 1409C>T
7 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001348802.2 99.9% 99.8% 1409C>T
8 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001348804.2 99.9% 99.8% 1409C>T
9 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001348805.2 99.9% 99.8% 1409C>T
10 human 26137 ZBTB20 zinc finger and BTB domain ... NM_015642.6 99.9% 99.8% 1409C>T
11 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001164342.2 90.1% 90% 1_219del;1628C>T
12 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001348800.2 90.1% 90% 1_219del;1628C>T
13 human 26137 ZBTB20 zinc finger and BTB domain ... NM_001348803.2 90.1% 90% 1_219del;1628C>T
14 mouse 56490 Zbtb20 zinc finger and BTB domain ... NM_181058.1 92.2% 97.6% (many diffs)
15 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522422.3 92.2% 97.6% (many diffs)
16 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522424.3 92.2% 97.6% (many diffs)
17 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317099.1 92.2% 97.6% (many diffs)
18 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317100.1 92.2% 97.6% (many diffs)
19 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317101.1 92.2% 97.6% (many diffs)
20 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317102.1 92.2% 97.6% (many diffs)
21 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317103.1 92.2% 97.6% (many diffs)
22 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317104.1 92.2% 97.6% (many diffs)
23 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317105.1 92.2% 97.6% (many diffs)
24 mouse 56490 Zbtb20 zinc finger and BTB domain ... NM_001285805.1 83.1% 87.9% (many diffs)
25 mouse 56490 Zbtb20 zinc finger and BTB domain ... NM_019778.2 83.1% 87.9% (many diffs)
26 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522412.3 83.1% 87.9% (many diffs)
27 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522413.3 83.1% 87.9% (many diffs)
28 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522414.2 83.1% 87.9% (many diffs)
29 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522415.3 83.1% 87.9% (many diffs)
30 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522416.3 83.1% 87.9% (many diffs)
31 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522418.3 83.1% 87.9% (many diffs)
32 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245989.2 83.1% 87.9% (many diffs)
33 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245990.2 83.1% 87.9% (many diffs)
34 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317091.1 83.1% 87.9% (many diffs)
35 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317092.1 83.1% 87.9% (many diffs)
36 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317093.1 83.1% 87.9% (many diffs)
37 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317094.1 83.1% 87.9% (many diffs)
38 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317095.1 83.1% 87.9% (many diffs)
39 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317096.1 83.1% 87.9% (many diffs)
40 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317097.1 83.1% 87.9% (many diffs)
41 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317098.1 83.1% 87.9% (many diffs)
42 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522403.3 82.6% 87.3% (many diffs)
43 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522404.3 82.6% 87.3% (many diffs)
44 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522406.3 82.6% 87.3% (many diffs)
45 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522407.3 82.6% 87.3% (many diffs)
46 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522408.3 82.6% 87.3% (many diffs)
47 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522409.3 82.6% 87.3% (many diffs)
48 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522410.3 82.6% 87.3% (many diffs)
49 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_006522411.3 82.6% 87.3% (many diffs)
50 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245978.2 82.6% 87.3% (many diffs)
51 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245979.2 82.6% 87.3% (many diffs)
52 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245980.2 82.6% 87.3% (many diffs)
53 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245981.2 82.6% 87.3% (many diffs)
54 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245982.2 82.6% 87.3% (many diffs)
55 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245983.2 82.6% 87.3% (many diffs)
56 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245984.2 82.6% 87.3% (many diffs)
57 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245985.2 82.6% 87.3% (many diffs)
58 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245986.2 82.6% 87.3% (many diffs)
59 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245987.2 82.6% 87.3% (many diffs)
60 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_011245988.2 82.6% 87.3% (many diffs)
61 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317087.1 82.6% 87.3% (many diffs)
62 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317088.1 82.6% 87.3% (many diffs)
63 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317089.1 82.6% 87.3% (many diffs)
64 mouse 56490 Zbtb20 zinc finger and BTB domain ... XM_017317090.1 82.6% 87.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2070
ORF length:
2004
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CGAGCGCATT CACAGCATCA ACCTTCACAA CTTCAGCAAT TCCGTGCTCG
121AGACCCTCAA CGAGCAGCGC AACCGTGGCC ACTTCTGTGA CGTAACGGTG CGCATCCACG
181GGAGCATGCT GCGCGCACAC CGCTGCGTGC TGGCAGCCGG CAGCCCCTTC TTCCAGGACA
241AACTGCTGCT TGGCTACAGC GACATCGAGA TCCCGTCGGT GGTGTCAGTG CAGTCAGTGC
301AAAAGCTCAT TGACTTCATG TACAGCGGCG TGCTACGGGT CTCGCAGTCG GAAGCTCTGC
361AGATCCTCAC GGCCGCCAGC ATCCTGCAGA TCAAAACAGT CATCGACGAG TGCACGCGCA
421TCGTGTCACA GAACGTGGGC GATGTGTTCC CGGGGATCCA GGACTCGGGC CAGGACACGC
481CGCGGGGCAC TCCCGAGTCA GGCACGTCAG GCCAGAGCAG CGACACGGAG TCGGGCTACC
541TGCAGAGCCA CCCACAGCAC AGCGTGGACA GGATCTACTC GGCACTCTAC GCGTGCTCCA
601TGCAGAATGG CAGCGGCGAG CGCTCTTTTT ACAGCGGCGC AGTGGTCAGC CACCACGAGA
661CTGCGCTCGG CCTGCCCCGC GACCACCACA TGGAAGACCC CAGCTGGATC ACACGCATCC
721ATGAGCGCTC GCAGCAGATG GAGCGCTACC TGTCCACCAC CCCCGAGACC ACGCACTGCC
781GCAAGCAGCC CCGGCCTGTG CGCATCCAGA CCCTAGTGGG CAACATCCAC ATCAAGCAGG
841AGATGGAGGA CGATTACGAC TACTACGGGC AGCAAAGGGT GCAGATCCTG GAACGCAACG
901AATCCGAGGA GTGCACGGAA GACACAGACC AGGCCGAGGG CACCGAGAGT GAGCCCAAAG
961GTGAAAGCTT CGACTCGGGC GTCAGCTCCT CCATAGGCAC CGAGCCTGAC TCGGTGGAGC
1021AGCAGTTTGG GCCTGGGGCG GCGCGGGACA GCCAGGCTGA ACCCACCCAA CCCGAGCAGG
1081CTGCAGAAGC CCCCGCTGAG GGTGGTCCGC AGACAAACCA GCTAGAAACA GGTGCTTCCT
1141CTCCGGAGAG AAGCAATGAA GTGGAGATGG ACAGCACTGT TATCACTGTC AGCAACAGCT
1201CCGACAAGAG CGTCCTACAA CAGCCTTCGG TCAACACGTC CATCGGGCAG CCATTGCCAA
1261GTACCCAGCT CTACTTACGC CAGACAGAAA CCCTCACCAG CAACCTGAGG ATGCCTCTGA
1321CCTTGACCAG CAACACGCAG GTCATTGGCA CAGCTGGCAA CACCTACCTG CCAGCCCTCT
1381TCACTACCCA GCCCGCGGGC AGTGGCCCCA AGCCTTTCCT CTTCAGCCTG CCACAGCCCC
1441TGGCAGGCCA GCAGACCCAG TTTGTGACAG TGTTCCAGCC CGGTCTGTCG ACCTTTACTG
1501CACAGCTGCC AGCGCCACAG CCCCTGGCCT CATCCGCAGG CCACAGCACA GCCAGTGGGC
1561AAGGCGAAAA AAAGCCTTAT GAGTGCACTC TCTGCAACAA GACTTTCACC GCCAAACAGA
1621ACTACGTCAA GCACATGTTC GTACACACAG GTGAGAAGCC CCACCAATGC AGCATCTGTT
1681GGCGCTCCTT CTCCTTAAAG GATTACCTTA TCAAGCACAT GGTGACACAC ACAGGAGTGA
1741GGGCATACCA GTGTAGTATC TGCAACAAGC GCTTCACCCA GAAGAGCTCC CTCAACGTGC
1801ACATGCGCCT CCACCGGGGA GAGAAGTCCT ACGAGTGCTA CATCTGCAAA AAGAAGTTCT
1861CTCACAAGAC CCTCCTGGAG CGACACGTGG CCCTGCACAG TGCCAGCAAT GGGACCCCCC
1921CTGCAGGCAC ACCCCCAGGT GCCCGCGCTG GCCCCCCAGG CGTGGTGGCC TGCACGGAGG
1981GGACCACTTA CGTCTGCTCC GTCTGCCCAG CAAAGTTTGA CCAAATCGAG CAGTTCAACG
2041ACCACATGAG GATGCATGTG TCTGACGGAT ACCCAACTTT CTTGTACAAA GTtggcatta
2101taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)