Construct: ORF ccsbBroadEn_08056

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006762.1_s300c1, BRDN0000392280
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SDCBP2 (27111)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27111 SDCBP2 syndecan binding protein 2 NM_001199784.1 99.8% 100% 705G>A
2 human 27111 SDCBP2 syndecan binding protein 2 NM_080489.5 99.8% 100% 705G>A
3 human 27111 SDCBP2 syndecan binding protein 2 NM_015685.5 70.7% 70.8% 0_1ins255;450G>A
4 human 100528031 FKBP1A-SDCBP2 FKBP1A-SDCBP2 readthrough (... NR_037661.1 51.8% 1_278del;983G>A;1155_1689del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
942
ORF length:
876
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC ATCCCTGTAC CCATCTCTAG AGGACCTAAA AGTGGACCAA GCCATTCAGG
121CCCAGGTCAG AGCCTCACCC AAGATGCCAG CCCTGCCAGT CCAGGCAACA GCCATTTCCC
181CACCACCAGT TTTGTACCCA AACTTGGCAG AACTGGAAAA TTATATGGGT CTTTCCCTCT
241CCAGCCAAGA AGTCCAGGAG AGCCTGCTTC AGATTCCAGA GGGTGACAGT ACAGCGGTCT
301CGGGCCCCGG GCCCGGCCAG ATGGTGGCAC CGGTAACCGG GTACAGCCTG GGCGTGCGGC
361GAGCTGAGAT CAAGCCCGGG GTGCGCGAGA TCCACCTGTG CAAGGACGAG CGCGGCAAGA
421CCGGGCTGAG GCTGCGGAAG GTCGACCAGG GGCTCTTTGT GCAGTTGGTC CAGGCCAACA
481CCCCTGCATC CCTTGTGGGG CTGCGCTTTG GGGACCAGCT CCTGCAGATT GACGGGCGTG
541ACTGTGCTGG GTGGAGCTCG CACAAAGCCC ATCAGGTGGT GAAGAAGGCA TCAGGCGATA
601AGATTGTCGT GGTGGTTCGG GACAGGCCGT TCCAGCGGAC TGTCACCATG CACAAGGACA
661GCATGGGCCA CGTCGGCTTC GTGATCAAGA AGGGGAAGAT TGTCTCTCTG GTCAAAGGGA
721GTTCTGCGGC CCGCAACGGG CTCCTCACCA ACCACTACGT GTGTGAGGTA GACGGGCAGA
781ATGTTATCGG GCTGAAGGAC AAAAAGATCA TGGAGATTCT GGCCACGGCT GGGAACGTTG
841TCACCCTGAC CATCATCCCC AGTGTGATCT ACGAGCACAT GGTCAAAAAG TTGCCTCCAG
901TCCTGCTCCA CCACACCATG GACCACTCCA TCCCAGATGC CTGCCCAACT TTCTTGTACA
961AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)