Transcript: Human NR_037661.1

Homo sapiens FKBP1A-SDCBP2 readthrough (NMD candidate) (FKBP1A-SDCBP2), long non-coding RNA.

Source:
NCBI, updated 2018-12-04
Taxon:
Homo sapiens (human)
Gene:
FKBP1A-SDCBP2 (100528031)
Length:
1689
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_037661.1
NBCI Gene record:
FKBP1A-SDCBP2 (100528031)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_037661.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415562 GATTCTCTTGTGCTGATTTAA pLKO_005 1382 3UTR 100% 15.000 7.500 Y SDCBP2 n/a
2 TRCN0000433023 GTGACCATGGGATGGCTTATA pLKO_005 1293 3UTR 100% 13.200 6.600 Y SDCBP2 n/a
3 TRCN0000063841 GAAGAAGGCATCAGGCGATAA pLKO.1 794 3UTR 100% 10.800 5.400 Y SDCBP2 n/a
4 TRCN0000063840 GAAGATTGTCTCTCTGGTCAA pLKO.1 908 3UTR 100% 4.050 2.025 Y SDCBP2 n/a
5 TRCN0000063838 GCAGAATGTTATCGGGCTGAA pLKO.1 989 3UTR 100% 4.050 2.025 Y SDCBP2 n/a
6 TRCN0000063839 GATAAGATTGTCGTGGTGGTT pLKO.1 810 3UTR 100% 2.640 1.320 Y SDCBP2 n/a
7 TRCN0000063842 GCGGACTGTCACCATGCACAA pLKO.1 848 3UTR 100% 1.350 0.675 Y SDCBP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_037661.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08056 pDONR223 100% 51.8% None 1_278del;983G>A;1155_1689del n/a
2 ccsbBroad304_08056 pLX_304 0% 51.8% V5 1_278del;983G>A;1155_1689del n/a
3 TRCN0000466740 CTTCTGTCGCCTGGTTCGTCCCGT pLX_317 28.7% 51.8% V5 1_278del;983G>A;1155_1689del n/a
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