Construct: ORF ccsbBroadEn_08114

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006303.1_s300c1, BRDN0000389286
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCG3 (29106)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29106 SCG3 secretogranin III NM_013243.4 99.9% 99.7% 500T>C
2 human 29106 SCG3 secretogranin III NM_001165257.1 50.4% 50.4% 0_1ins696
3 mouse 20255 Scg3 secretogranin III NM_009130.3 85.7% 88.1% (many diffs)
4 mouse 20255 Scg3 secretogranin III NM_001164790.1 84.9% 86.8% (many diffs)
5 mouse 20255 Scg3 secretogranin III XM_006510881.3 79.5% 81.9% (many diffs)
6 mouse 20255 Scg3 secretogranin III XM_017313220.1 78.7% 80.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1470
ORF length:
1404
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GTTCCTCGGG ACCGGCACTT GGATTCTGGT GTTAGTGCTC CCGATTCAAG
121CTTTCCCCAA ACCTGGAGGA AGCCAAGACA AATCTCTACA TAATAGAGAA TTAAGTGCAG
181AAAGACCTTT GAATGAACAG ATTGCTGAAG CAGAAGAAGA CAAGATTAAA AAAACATATC
241CTCCAGAAAA CAAGCCAGGT CAGAGCAACT ATTCTTTTGT TGATAACTTG AACCTGCTAA
301AGGCAATAAC AGAAAAGGAA AAAATTGAGA AAGAAAGACA ATCTATAAGA AGCTCCCCAC
361TTGATAATAA GTTGAATGTG GAAGATGTTG ATTCAACCAA GAATCGAAAA CTGATCGATG
421ATTATGACTC TACTAAGAGT GGATTGGATC ATAAATTTCA AGATGATCCA GATGGTCTTC
481ATCAACTAGA CGGGACTCCT TTAACCGCTG AAGACATTGT CCATAAAATC GCTGCCAGGA
541TTTATGAAGA AAATGACAGA GCCGCGTTTG ACAAGATTGT TTCTAAACTA CTTAATCTCG
601GCCTTATCAC AGAAAGCCAA GCACATACAC TGGAAGATGA AGTAGCAGAG GTTTTACAAA
661AATTAATCTC AAAGGAAGCC AACAATTATG AGGAGGATCC CAATAAGCCC ACAAGCTGGA
721CTGAGAATCA GGCTGGAAAA ATACCAGAGA AAGTGACTCC AATGGCAGCA ATTCAAGATG
781GTCTTGCTAA GGGAGAAAAC GATGAAACAG TATCTAACAC ATTAACCTTG ACAAATGGCT
841TGGAAAGGAG AACTAAAACC TACAGTGAAG ACAACTTTGA GGAACTCCAA TATTTCCCAA
901ATTTCTATGC GCTACTGAAA AGTATTGATT CAGAAAAAGA AGCAAAAGAG AAAGAAACAC
961TGATTACTAT CATGAAAACA CTGATTGACT TTGTGAAGAT GATGGTGAAA TATGGAACAA
1021TATCTCCAGA AGAAGGTGTT TCCTACCTTG AAAACTTGGA TGAAATGATT GCTCTTCAGA
1081CCAAAAACAA GCTAGAAAAA AATGCTACTG ACAATATAAG CAAGCTTTTC CCAGCACCAT
1141CAGAGAAGAG TCATGAAGAA ACAGACAGTA CCAAGGAAGA AGCAGCTAAG ATGGAAAAGG
1201AATATGGAAG CTTGAAGGAT TCCACAAAAG ATGATAACTC CAACCCAGGA GGAAAGACAG
1261ATGAACCCAA AGGAAAAACA GAAGCCTATT TGGAAGCCAT CAGAAAAAAT ATTGAATGGT
1321TGAAGAAACA TGACAAAAAG GGAAATAAAG AAGATTATGA CCTTTCAAAG ATGAGAGACT
1381TCATCAATAA ACAAGCTGAT GCTTATGTGG AGAAAGGCAT CCTTGACAAG GAAGAAGCCG
1441AGGCCATCAA GCGCATTTAT AGCAGCCTGT ACCCAACTTT CTTGTACAAA GTtggcatta
1501taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)