Construct: ORF ccsbBroadEn_08131
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001708.1_s300c1, BRDN0000393205
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX10 (29887)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29887 | SNX10 | sorting nexin 10 | NM_001199835.1 | 99.6% | 99.5% | 9G>A;340G>N |
| 2 | human | 29887 | SNX10 | sorting nexin 10 | NM_001318199.2 | 99.6% | 99.5% | 9G>A;340G>N |
| 3 | human | 29887 | SNX10 | sorting nexin 10 | NM_013322.2 | 99.6% | 99.5% | 9G>A;340G>N |
| 4 | human | 29887 | SNX10 | sorting nexin 10 | XM_006715712.2 | 99.6% | 99.5% | 9G>A;340G>N |
| 5 | human | 29887 | SNX10 | sorting nexin 10 | NM_001199837.2 | 97.6% | 97% | (many diffs) |
| 6 | human | 29887 | SNX10 | sorting nexin 10 | NM_001318198.1 | 87.6% | 85.4% | (many diffs) |
| 7 | human | 29887 | SNX10 | sorting nexin 10 | NM_001362753.1 | 87.6% | 85.4% | (many diffs) |
| 8 | human | 29887 | SNX10 | sorting nexin 10 | NM_001362754.1 | 87.6% | 85.4% | (many diffs) |
| 9 | human | 29887 | SNX10 | sorting nexin 10 | XM_017012086.1 | 87.6% | 85.4% | (many diffs) |
| 10 | human | 29887 | SNX10 | sorting nexin 10 | NM_001199838.1 | 58% | 57.7% | 0_1ins252;88G>N |
| 11 | mouse | 71982 | Snx10 | sorting nexin 10 | NM_001127348.1 | 88.4% | 95% | (many diffs) |
| 12 | mouse | 71982 | Snx10 | sorting nexin 10 | NM_001127349.1 | 88.4% | 95% | (many diffs) |
| 13 | mouse | 71982 | Snx10 | sorting nexin 10 | NM_028035.4 | 88.4% | 95% | (many diffs) |
| 14 | mouse | 71982 | Snx10 | sorting nexin 10 | XM_006506653.3 | 88.4% | 95% | (many diffs) |
| 15 | mouse | 71982 | Snx10 | sorting nexin 10 | XM_017321753.1 | 88.4% | 95% | (many diffs) |
| 16 | mouse | 71982 | Snx10 | sorting nexin 10 | XM_011241474.1 | 71.3% | 75.1% | (many diffs) |
| 17 | mouse | 71982 | Snx10 | sorting nexin 10 | XM_011241475.1 | 71.3% | 75.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 669
- ORF length:
- 603
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT TCCAGAACAA CAGAAAGAGG AATTTGTAAG TGTCTGGGTT CGAGATCCTA 121 GGATTCAGAA GGAGGACTTC TGGCATTCTT ACATTGACTA TGAGATATGT ATTCATACTA 181 ATAGCATGTG TTTTACAATG AAAACATCCT GTGTACGAAG AAGATATAGA GAATTCGTGT 241 GGCTGAGGCA GAGACTCCAA AGTAATGCGT TGCTGGTACA ACTGCCAGAA CTTCCATCTA 301 AAAACCTGTT TTTCAACATG AACAATCGCC AGCACGTGGA TCAGCGTCGC CAGGGTCTGG 361 AAGATTTCCT CAGAAAAGTC CTACAGAATG CACTTTTGCT TTCANATAGC AGCCTTCACC 421 TCTTCTTACA GAGCCATCTG AATTCAGAAG ACATTGAGGC GTGTGTTTCT GGGCAGACTA 481 AGTACTCTGT GGAAGAAGCA ATTCACAAGT TTGCCTTAAT GAATAGACGT TTCCCTGAAG 541 AAGATGAAGA AGGAAAAAAA GAAAATGATA TAGATTATGA TTCAGAAAGT TCATCCTCTG 601 GGCTTGGACA CAGTAGTGAT GACAGCAGTT CACATGGATG TAAAGTAAAT ACAGCTCCGC 661 AGGAATCCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 721 tttgttgcaa cgaac