Construct: ORF ccsbBroadEn_08151
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009881.1_s300c1, BRDN0000391337
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STRN3 (29966)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29966 | STRN3 | striatin 3 | NM_014574.4 | 99.9% | 99.8% | 1160A>G |
| 2 | human | 29966 | STRN3 | striatin 3 | XM_005267570.4 | 95% | 94.8% | 989_1099del;1271A>G |
| 3 | human | 29966 | STRN3 | striatin 3 | XM_005267569.4 | 93.7% | 93.6% | 988_1128del;1301A>G |
| 4 | human | 29966 | STRN3 | striatin 3 | NM_001083893.2 | 89.4% | 89.3% | 988_1239del;1412A>G |
| 5 | mouse | 94186 | Strn3 | striatin, calmodulin bindin... | NM_001172098.1 | 92.2% | 96% | (many diffs) |
| 6 | mouse | 94186 | Strn3 | striatin, calmodulin bindin... | XM_006516412.3 | 87.6% | 91.2% | (many diffs) |
| 7 | mouse | 94186 | Strn3 | striatin, calmodulin bindin... | XM_006516410.3 | 86.5% | 90.1% | (many diffs) |
| 8 | mouse | 94186 | Strn3 | striatin, calmodulin bindin... | XM_006516411.3 | 84.5% | 87% | (many diffs) |
| 9 | mouse | 94186 | Strn3 | striatin, calmodulin bindin... | NM_052973.2 | 82.5% | 85.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2208
- ORF length:
- 2139
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACGAGCTT GCCGGAGGCG GTGGTGGCGG CCCGGGGATG GCGGCCCCTC 121 CCCGGCAGCA GCAGGGACCT GGGGGGAACC TGGGCCTTTC GCCCGGGGGG AACGGAGCGG 181 CGGGCGGCGG GGGTCCTCCG GCCTCCGAGG GAGCGGGTCC CGCGGCAGGC CCCGAGCTGT 241 CCCGGCCGCA GCAGTACACT ATCCCGGGGA TACTGCACTA CATCCAGCAC GAGTGGGCTC 301 GGTTCGAGAT GGAGCGGGCG CACTGGGAGG TGGAACGGGC CGAACTGCAG GCCCGGATTG 361 CATTTCTACA AGGCGAAAGA AAAGGTCAAG AGAACCTGAA GAAGGACTTA GTAAGAAGAA 421 TAAAGATGTT AGAGTATGCA TTAAAACAAG AAAGGGCAAA ATATCACAAA TTAAAATATG 481 GCACGGAACT GAACCAAGGT GACTTGAAAA TGCCAACCTT TGAGTCAGAA GAAACCAAAG 541 ACACAGAGGC TCCCACAGCA CCTCAGAATA GCCAGTTAAC GTGGAAGCAA GGCAGACAGC 601 TTTTAAGACA GTATCTTCAG GAAGTAGGTT ATACAGATAC AATATTAGAT GTACGGTCTC 661 AGCGGGTAAG GTCATTACTT GGACTATCTA ATTCAGAACC AAATGGATCA GTAGAAACAA 721 AGAATTTAGA ACAGATCCTG AATGGAGGTG AATCTCCTAA GCAAAAGGGA CAAGAAATAA 781 AAAGGTCCTC TGGTGATGTT CTTGAGACGT TCAATTTCTT AGAAAATGCC GATGACAGTG 841 ATGAAGATGA GGAAAATGAC ATGATCGAAG GCATCCCAGA AGGAAAAGAC AAACATCGGA 901 TGAATAAACA TAAAATAGGT AATGAAGGTT TAGCTGCTGA CCTAACTGAC GATCCTGATA 961 CTGAGGAAGC ACTGAAAGAA TTTGATTTTT TAGTGACTGC TGAAGATGGT GAAGGAGCTG 1021 GAGAAGCACG GAGTTCGGGG GATGGCACAG AATGGGCTGA ACCAATAACG TTTCCATCTG 1081 GAGGAGGCAA GTCATTTATT ATGGGTTCTG ATGATGTTTT GTTAAGTGTA CTGGGCCTTG 1141 GAGACCTTGC AGACTTGACG GTAACAAATG ATGCAGACTA TAGTTATGAT TTGCCTGCTA 1201 ATAAAGATGC CTTTCGAAAG ACATGGAGTC CCAAGTATAC ACTACGTAGC CATTTTGATG 1261 GAGTACGGGC ATTAGCTTTT CATCCTGTAG AACCTGTGCT GGTTACTGCT TCTGAGGACC 1321 ATACCCTGAA ACTTTGGAAC CTGCAAAAAA CAGTTCCTGC CAAAAAGAGT GCCTCTTTAG 1381 ATGTAGAGCC TATCTACACA TTTAGGGCCC ACATCGGCCC TGTTCTGTCA TTAGCTATTA 1441 GTTCTAATGG AGAACAGTGT TTTAGTGGTG GTATTGATGC AACCATCCAG TGGTGGAATA 1501 TGCCGAGTCC CAGTGTAGAT CCATATGATA CATATGAGCC AAATGTTCTA GCTGGCACTT 1561 TAGTTGGTCA TACAGATGCA GTTTGGGGTC TTGCTTATAG TGGCATAAAA AATCAATTAC 1621 TGTCTTGTTC AGCAGATGGC ACTGTTAGGT TATGGAATCC ACAAGAAAAA TTGCCATGTA 1681 TTTGCACTTA CAATGGAGAT AAAAAGCATG GAATACCTAC ATCAGTTGAC TTTATAGGCT 1741 GTGATCCAGC TCATATGGTA ACCTCTTTCA ACACTGGTAG TGCAGTAATT TATGATTTAG 1801 AAACATCACA GTCATTGGTG ATACTTTCAT CACAGGTAGA TTCTGGTTTA CAATCTAATA 1861 ATCATATCAA CAGAGTAGTA AGTCATCCCA CACTTCCTGT TACAATAACT GCTCATGAAG 1921 ATAGACACAT CAAATTTTTT GACAATAAAA CGGGTAAAAT GATCCATTCT ATGGTAGCTC 1981 ACTTGGATGC TGTTACAAGT CTAGCAGTAG ATCCTAATGG AATCTATTTG ATGTCTGGAA 2041 GCCATGACTG TTCCATCAGA TTATGGAATT TAGACAGCAA GACATGTGTG CAAGAAATAA 2101 CAGCTCACAG AAAGAAATTG GATGAATCAA TTTATGATGT TGCTTTCCAC TCGTCAAAAG 2161 CATATATAGC TAGTGCAGGA GCTGATGCTC TTGCCAAAGT ATTTGTATTG CCAACTTTCT 2221 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac