Transcript: Human NM_001083893.2

Homo sapiens striatin 3 (STRN3), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
STRN3 (29966)
Length:
4195
CDS:
195..2588

Additional Resources:

NCBI RefSeq record:
NM_001083893.2
NBCI Gene record:
STRN3 (29966)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001083893.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000370206 TCTCAGCGGGTAAGGTCATTA pLKO_005 783 CDS 100% 13.200 18.480 N STRN3 n/a
2 TRCN0000036951 GCTGGCACTTTAGTTGGTCAT pLKO.1 1929 CDS 100% 4.050 5.670 N STRN3 n/a
3 TRCN0000036953 CCTCTTTAGATGTAGAGCCTA pLKO.1 1750 CDS 100% 2.640 3.696 N STRN3 n/a
4 TRCN0000377467 ATGTTCTTGAGACGTTCAATT pLKO_005 922 CDS 100% 13.200 10.560 N STRN3 n/a
5 TRCN0000370207 TCATATCAACAGAGTAGTAAG pLKO_005 2240 CDS 100% 10.800 8.640 N STRN3 n/a
6 TRCN0000036952 GCCCGGATTGCATTTCTACAA pLKO.1 477 CDS 100% 4.950 3.960 N STRN3 n/a
7 TRCN0000365147 AGATCCTAATGGAATCTATTT pLKO_005 2387 CDS 100% 13.200 9.240 N STRN3 n/a
8 TRCN0000365162 GATGTGAACTGAGCGTATATC pLKO_005 2824 3UTR 100% 13.200 9.240 N STRN3 n/a
9 TRCN0000365146 GATTCTGGTTTACAATCTAAT pLKO_005 2217 CDS 100% 13.200 9.240 N STRN3 n/a
10 TRCN0000036950 CCTGTTACAATAACTGCTCAT pLKO.1 2274 CDS 100% 4.050 2.835 N STRN3 n/a
11 TRCN0000036949 GCCTGCTAATAAAGATGCCTT pLKO.1 1571 CDS 100% 2.640 1.848 N STRN3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001083893.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08151 pDONR223 100% 89.4% 89.3% None 988_1239del;1412A>G n/a
2 ccsbBroad304_08151 pLX_304 0% 89.4% 89.3% V5 988_1239del;1412A>G n/a
3 TRCN0000476900 CGCTTCTAATTCGATCTACTAGGA pLX_317 17.9% 89.4% 89.3% V5 988_1239del;1412A>G n/a
Download CSV