Construct: ORF ccsbBroadEn_08157

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006865.1_s300c1, BRDN0000392839
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NOP53 (29997)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29997 NOP53 NOP53 ribosome biogenesis f... NM_015710.5 99.7% 99.7% 705A>G;1166A>G;1221G>A
2 human 440311 LOC440311 NOP53 ribosome biogenesis f... NR_077061.1 79.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1500
ORF length:
1434
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCAGGAGGC AGTGGCGTTG GTGGGAAGCG CAGCTCGAAA AGCGATGCCG
121ATTCTGGTTT CCTGGGGCTG CGGCCCACTT CGGTGGACCC AGCGCTGAGG CGGCGGCGGC
181GAGGCCCAAG AAATAAGAAG CGGGGCTGGC GGCGGCTTGC TCAGGAGCCG CTGGGGCTGG
241AGGTTGACCA GTTCCTGGAA GACGTGCGGC TACAGGAGCG CACGAGCGGT GGCTTGTTGT
301CAGAGGCCCC AAATGAAAAA CTCTTCTTCG TGGACACTGG CTCCAAGGAA AAAGGGCTGA
361CAAAGAAGAG AACCAAAGTC CAGAAGAAGT CACTGCTTCT CAAGAAACCC CTTCGGGTTG
421ACCTCATCCT CGAGAACACA TCCAAAGTCC CTGCCCCCAA AGACGTCCTC GCCCACCAGG
481TCCCCAACGC CAAGAAGCTC AGGCGGAAGG AGCAGCTATG GGAGAAGCTG GCCAAGCAGG
541GCGAGCTGCC CCGGGAGGTG CGCAGGGCCC AGGCCCGGCT CCTCAACCCT TCTGCAACAA
601GGGCCAAGCC CGGGCCCCAG GACACCGTAG AGCGGCCCTT CTACGACCTC TGGGCCTCAG
661ACAACCCCCT GGACAGGCCG TTGGTTGGCC AGGATGAGTT TTTCCTGGAG CAGACCAAGA
721AGAAAGGAGT GAAGCGGCCA GCACGCCTGC ACACCAAGCC GTCCCAGGCG CCCGCCGTGG
781AGGTGGCGCC TGCCGGAGCT TCCTACAATC CATCCTTTGA AGACCACCAG ACCCTGCTCT
841CAGCGGCCCA CGAGGTGGAG TTGCAGCGGC AGAAGGAGGC GGAGAAGCTG GAGCGGCAGC
901TGGCCCTGCC CGCCACGGAG CAGGCCGCCA CCCAGGAGTC CACATTCCAG GAGCTGTGCG
961AGGGGCTGCT GGAGGAGTCG GATGGTGAGG GGGAGCCAGG CCAGGGCGAG GGGCCGGAGG
1021CTGGGGATGC CGAGGTCTGT CCCACGCCCG CCCGCCTGGC CACCACAGAG AAGAAGACGG
1081AGCAGCAGCG GCGGCGGGAG AAGGCTGTGC ACAGGCTGCG GGTACAGCAG GCCGCGTTGC
1141GGGCCGCCCG GCTCCGGCAC CAGGAGCTGT TCCGGCTGCG CGGGATCAAG GCCCAGGTGG
1201CCCTGAGGCT GGCGGAGCTG GCGCGGCGGC GGAGGCGGCG GCAGGCGCGG CGGGAGGCTG
1261AGGCTGACAA GCCCCGAAGG CTGGGACGGC TCAAGTACCA GGCACCTGAC ATCGACGTGC
1321AGCTGAGCTC GGAGCTGACA GACTCGCTCA GGACCCTGAA GCCCGAGGGC AACATCCTTC
1381GAGACCGGTT CAAGAGCTTC CAGAGGAGGA ATATGATCGA GCCTCGAGAG AGAGCCAAGT
1441TCAAACGCAA GTACAAGGTG AAGCTGGTGG AGAAGCGGGC GTTCCGTGAG ATCCAGTTGT
1501ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1561acgaac

Download FASTA (ORF) (Full)