Construct: ORF ccsbBroadEn_08171
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015830.1_s300c1, BRDN0000397449
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TAX1BP3 (30851)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 30851 | TAX1BP3 | Tax1 binding protein 3 | NM_014604.4 | 99.7% | 100% | 120T>C |
| 2 | human | 30851 | TAX1BP3 | Tax1 binding protein 3 | NM_001204698.1 | 78.7% | 79% | 120T>C;157_158ins78 |
| 3 | human | 100533970 | P2RX5-TAX1BP3 | P2RX5-TAX1BP3 readthrough (... | NR_037928.1 | 5.7% | (many diffs) | |
| 4 | mouse | 76281 | Tax1bp3 | Tax1 (human T cell leukemia... | NM_029564.2 | 90.3% | 99.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 438
- ORF length:
- 372
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC CTACATCCCG GGCCAGCCGG TCACCGCCGT GGTGCAAAGA GTTGAAATTC 121 ACAAGCTGCG TCAAGGTGAG AACTTAATCC TGGGTTTCAG CATTGGAGGT GGAATCGACC 181 AGGACCCTTC CCAGAATCCC TTCTCTGAAG ACAAGACGGA CAAGGGTATT TATGTCACAC 241 GGGTGTCTGA AGGAGGCCCT GCTGAAATCG CTGGGCTGCA GATTGGAGAC AAGATCATGC 301 AGGTGAACGG CTGGGACATG ACCATGGTCA CACACGACCA GGCCCGCAAG CGGCTCACCA 361 AGCGCTCGGA GGAGGTGGTG CGTCTGCTGG TGACGCGGCA GTCGCTGCAG AAGGCCGTGC 421 AGCAGTCCAT GCTGTCCTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 481 gcttatcaat ttgttgcaac gaac