Construct: ORF ccsbBroadEn_08202
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004685.1_s300c1, BRDN0000386544
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZBTB7B (51043)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | NM_001256455.1 | 99.8% | 100% | 390C>T;1416A>G |
| 2 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | XM_006711349.2 | 99.8% | 100% | 390C>T;1416A>G |
| 3 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | XM_006711353.1 | 99.8% | 100% | 390C>T;1416A>G |
| 4 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | XM_006711354.1 | 99.8% | 100% | 390C>T;1416A>G |
| 5 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | XM_006711356.3 | 99.8% | 100% | 390C>T;1416A>G |
| 6 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | XM_006711357.1 | 99.8% | 100% | 390C>T;1416A>G |
| 7 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | XM_006711358.1 | 99.8% | 100% | 390C>T;1416A>G |
| 8 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | XM_006711359.2 | 99.8% | 100% | 390C>T;1416A>G |
| 9 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | XM_011509599.2 | 99.8% | 100% | 390C>T;1416A>G |
| 10 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | NM_001252406.2 | 93.9% | 94% | 1_102del;492C>T;1518A>G |
| 11 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | XM_011509598.2 | 93.9% | 94% | 1_102del;492C>T;1518A>G |
| 12 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | XM_017001399.1 | 85.4% | 85.5% | 1_273del;663C>T;1689A>G |
| 13 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | NR_049765.1 | 44.4% | (many diffs) | |
| 14 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | NR_046206.1 | 43.4% | (many diffs) | |
| 15 | human | 51043 | ZBTB7B | zinc finger and BTB domain ... | NR_045515.1 | 41.8% | (many diffs) | |
| 16 | mouse | 22724 | Zbtb7b | zinc finger and BTB domain ... | NM_009565.4 | 86.8% | 90.9% | (many diffs) |
| 17 | mouse | 22724 | Zbtb7b | zinc finger and BTB domain ... | XM_006501313.2 | 86.8% | 90.9% | (many diffs) |
| 18 | mouse | 22724 | Zbtb7b | zinc finger and BTB domain ... | XM_006501314.2 | 86.8% | 90.9% | (many diffs) |
| 19 | mouse | 22724 | Zbtb7b | zinc finger and BTB domain ... | XM_006501316.2 | 86.8% | 90.9% | (many diffs) |
| 20 | mouse | 22724 | Zbtb7b | zinc finger and BTB domain ... | XM_006501317.3 | 86.8% | 90.9% | (many diffs) |
| 21 | mouse | 22724 | Zbtb7b | zinc finger and BTB domain ... | XM_006501318.3 | 86.8% | 90.9% | (many diffs) |
| 22 | mouse | 22724 | Zbtb7b | zinc finger and BTB domain ... | XM_006501319.3 | 86.8% | 90.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1683
- ORF length:
- 1617
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG 61 TTGGCATGGG GAGCCCCGAG GATGACCTGA TTGGGATTCC ATTCCCGGAC CACAGCAGTG 121 AGCTCCTGAG CTGCCTCAAT GAGCAGCGCC AGCTGGGCCA CCTATGTGAC CTCACCATCC 181 GGACGCAGGG CCTTGAATAC CGCACCCACA GGGCTGTGCT AGCTGCCTGT AGCCACTACT 241 TCAAGAAGCT TTTCACTGAG GGCGGTGGCG GAGCTGTCAT GGGGGCCGGG GGTAGCGGGA 301 CGGCCACTGG GGGAGCAGGG GCCGGTGTGT GTGAGCTGGA CTTTGTAGGG CCAGAGGCAC 361 TAGGCGCCCT CCTTGAATTT GCCTATACAG CCACACTGAC CACCAGCAGC GCCAACATGC 421 CAGCTGTGCT CCAGGCTGCC CGCCTGCTGG AGATTCCGTG TGTCATCGCT GCTTGCATGG 481 AGATTCTGCA GGGCAGTGGG CTAGAAGCTC CCAGCCCGGA CGAGGATGAC TGTGAGCGAG 541 CCCGCCAGTA TCTGGAGGCC TTTGCCACAG CCACGGCCTC TGGAGTTCCC AATGGTGAAG 601 ACAGTCCTCC ACAGGTGCCC CTCCCACCAC CTCCGCCACC GCCACCTCGG CCTGTTGCCC 661 GCCGCAGCCG CAAGCCCCGG AAAGCTTTCC TGCAAACCAA GGGGGCCAGA GCAAACCACC 721 TAGTCCCTGA GGTGCCCACA GTGCCCGCCC ATCCCTTGAC CTATGAGGAG GAGGAGGTGG 781 CGGGCAGAGT GGGCAGCAGT GGGGGCAGTG GGCCGGGGGA CAGCTACAGC CCTCCCACAG 841 GAACTGCCTC CCCTCCTGAG GGTCCCCAGA GCTACGAACC CTATGAGGGT GAGGAAGAAG 901 AAGAGGAGCT GGTATATCCC CCAGCCTATG GGCTGGCGCA GGGTGGCGGG CCCCCGCTGT 961 CCCCAGAGGA GCTGGGCTCA GATGAGGATG CCATCGATCC TGACCTGATG GCCTACCTAA 1021 GCTCCCTGCA CCAGGACAAC CTGGCACCAG GCCTGGACAG CCAAGACAAG CTGGTGCGCA 1081 AACGCCGCTC CCAGATGCCT CAGGAGTGCC CTGTCTGCCA CAAGATCATC CATGGGGCAG 1141 GCAAACTGCC TCGCCACATG AGGACCCACA CAGGCGAGAA GCCCTTTGCC TGCGAGGTCT 1201 GCGGTGTTCG ATTCACCAGG AACGACAAGC TGAAGATCCA CATGCGGAAG CACACGGGAG 1261 AGCGCCCCTA CTCATGCCCG CACTGCCCAG CCCGCTTCCT GCACAGCTAC GACCTCAAGA 1321 ACCACATGCA CCTGCACACA GGGGACCGGC CCTATGAGTG CCACCTGTGC CACAAGGCTT 1381 TCGCCAAGGA GGACCACCTG CAGCGCCACC TCAAAGGCCA GAACTGCCTG GAGGTGCGCA 1441 CCCGACGGCG CCGCAAGGAC GATGCACCAC CCCACTACCC GCCACCCTCT ACCGCTGCTG 1501 CATCCCCCGC TGGCCTCGAC CTCTCCAATG GCCACCTGGA CACCTTCCGC CTCTCTCTAG 1561 CTCGATTCTG GGAGCAGTCA GCCCCCACTG GGCCCCCGGT CTCTACCCCA GGGCCCCCTG 1621 ATGACGATGA GGAGGAAGGG GCACCCACCA CACCCCAGGC TGAAGGTGCC ATGGAGTCCT 1681 CTTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1741 gcaacgaac