Construct: ORF ccsbBroadEn_08229

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003118.1_s300c1, BRDN0000391281
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KCTD3 (51133)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51133 KCTD3 potassium channel tetrameri... NM_016121.5 99.9% 100% 2322G>A
2 human 51133 KCTD3 potassium channel tetrameri... NM_001319294.2 99.7% 99.7% 1746_1747insGATGTA;2316G>A
3 human 51133 KCTD3 potassium channel tetrameri... XM_005273158.2 87.4% 87.2% (many diffs)
4 human 51133 KCTD3 potassium channel tetrameri... NM_001319295.2 87.1% 86.9% (many diffs)
5 mouse 226823 Kctd3 potassium channel tetrameri... NM_172650.2 83.7% 93.5% (many diffs)
6 mouse 226823 Kctd3 potassium channel tetrameri... XM_006497143.2 83.5% 93.3% (many diffs)
7 mouse 226823 Kctd3 potassium channel tetrameri... XM_011238911.2 75.5% 82.8% (many diffs)
8 mouse 226823 Kctd3 potassium channel tetrameri... XM_006497144.3 73.7% 78.6% (many diffs)
9 mouse 226823 Kctd3 potassium channel tetrameri... XM_017320169.1 55.3% 61.7% (many diffs)
10 mouse 226823 Kctd3 potassium channel tetrameri... XM_017320173.1 55.1% 61.5% (many diffs)
11 mouse 226823 Kctd3 potassium channel tetrameri... XM_017320175.1 47.5% 53.4% (many diffs)
12 mouse 226823 Kctd3 potassium channel tetrameri... XM_017320182.1 47.3% 53.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2514
ORF length:
2445
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGGAGGG CACTGCGGCA GCTTCCCCGC GGCGGCGGCC GGCAGCGGCG
121AGATCGTCCA ACTGAACGTA GGGGGGACCA GATTTAGTAC CTCAAGACAA ACTCTTATGT
181GGATTCCAGA TTCTTTTTTT TCCAGTTTGC TGAGTGGGAG AATTTCAACA CTTCGAGATG
241AAACTGGTGC TATATTTATT GATAGAGATC CAGCAGCATT TGCACCCATT TTAAATTTTC
301TTCGGACAAA AGAACTAGAC TTAAGGGGAG TGAGTATTAA TGTTCTCAGG CATGAAGCAG
361AATTTTACGG GATCACTCCA TTAGTAAGAA GGCTTCTCTT ATGTGAAGAA TTGGAGCGTT
421CCTCTTGTGG CAGTGTCCTT TTTCATGGTT ACTTGCCCCC ACCAGGTATT CCTAGTCGTA
481AAATAAACAA CACAGTCAGA TCTGCTGATT CTAGGAATGG TCTAAATTCT ACAGAAGGTG
541AAGCCCGGGG AAATGGTACA CAGCCTGTTC TCTCTGGAAC GGGAGAAGAA ACTGTTAGGC
601TAGGATTTCC TGTGGATCCA CGAAAGGTGC TAATAGTAGC TGGCCATCAC AACTGGATTG
661TAGCTGCATA TGCCCATTTT GCTGTGTGTT ACAGAATCAA AGAATCTTCA GGATGGCAGC
721AAGTGTTTAC GAGCCCATAT TTGGATTGGA CTATCGAACG AGTAGCTTTA AATGCAAAGG
781TGGTTGGAGG GCCACATGGA GACAAAGACA AAATGGTTGC TGTTGCCTCA GAGAGTAGCA
841TCATCTTGTG GAGTGTTCAG GATGGGGGAA GTGGAAGTGA AATTGGAGTG TTCAGCCTGG
901GTGTTCCTGT AGATGCTCTC TTCTTTATTG GTAACCAGTT GGTGGCCACG AGTCATACAG
961GGAAAGTGGG AGTGTGGAAT GCTGTCACTC AGCACTGGCA GGTTCAAGAT GTTGTTCCTA
1021TAACTAGTTA TGACACTGCT GGATCATTCC TTCTGCTTGG ATGTAACAAT GGATCAATAT
1081ATTACATAGA TATGCAGAAG TTCCCCTTGC GAATGAAAGA TAATGATCTT CTTGTAACTG
1141AACTGTATCA TGATCCTTCA AATGATGCTA TTACTGCTCT GAGTGTTTAC CTCACACCCA
1201AAACAAGTGT CAGTGGTAAC TGGATCGAGA TCGCCTATGG TACGAGCTCT GGAGCAGTAC
1261GAGTGATTGT ACAACACCCA GAGACAGTTG GGTCAGGTCC TCAGCTTTTT CAGACTTTCA
1321CAGTTCACCG AAGTCCCGTA ACAAAAATCA TGCTATCAGA GAAGCATCTT GTATCAGTCT
1381GTGCAGATAA TAATCATGTC CGGACGTGGA CAGTAACACG ATTCAGAGGA ATGATCTCTA
1441CTCAGCCAGG TTCTACTCCT TTAGCGTCAT TCAAGATACT ATCCCTGGAG GAGACAGAAA
1501GTCATGGTAG CTATTCCTCT GGAAATGACA TAGGACCTTT TGGAGAGCGA GACGATCAAC
1561AGGTGTTTAT CCAGAAAGTT GTTCCCATCA CCAACAAACT ATTTGTAAGA CTCTCATCGA
1621CTGGAAAAAG AATATGTGAG ATCCAGGCTG TTGACTGTAC TACAATATCC TCATTTACAG
1681TGAGGGAATG TGAGGGATCC AGTAGGATGG GCTCAAGACC AAGGCGCTAC TTGTTCACAG
1741GCCATACAAA TGGCAGTATT CAAATGTGGG ATCTGACCAC TGCTATGGAT ATGGTTAACA
1801AAAGTGAAGA TAAGGATGTA GGTGGTCCAA CCGAAGAAGA GCTACTCAAA TTACTCGATC
1861AATGTGATTT GAGCACATCT CGCTGTGCTA CTCCTAACAT CAGTCCAGCA ACTTCCGTAG
1921TTCAGCATAG CCACTTACGA GAATCAAATT CTAGCCTTCA GCTTCAGCAC CATGATACCA
1981CCCATGAAGC AGCTACTTAC GGTTCCATGA GGCCTTACAG AGAAAGTCCT TTATTAGCAA
2041GGGCAAGAAG GACTGAGAGC TTTCACAGTT ATAGGGACTT CCAGACTATT AATTTGAACA
2101GAAATGTAGA AAGAGCTGTC CCTGAAAATG GTAACTTGGG TCCAATACAA GCTGAAGTGA
2161AAGGGGCAAC AGGGGAATGT AATATATCTG AGAGAAAGTC TCCTGGAGTA GAAATAAAAA
2221GTTTGAGAGA ATTGGATAGT GGATTGGAAG TGCATAAAAT AGCTGAAGGT TTTTCAGAAT
2281CCAAGAAAAG GTCATCAGAA GATGAAAATG AAAATAAAAT AGAGTTTAGG AAGAAAGGAG
2341GATTTGAAGG GGGAGGATTC CTTGGAAGAA AGAAAGTTCC CTATCTGGCA TCATCACCAA
2401GTACTTCCGA TGGAGGAACT GACTCACCTG GTACTGCGTC CCCATCTCCT ACAAAGACTA
2461CTCCATCTCC TCGGCATAAA AAAAGTGATT CTTCAGGTCA GGAGTACAGC TTGTTGCCAA
2521CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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