Construct: ORF ccsbBroadEn_08254
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009896.1_s300c1, BRDN0000388822
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DUSP13 (51207)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51207 | DUSP13 | dual specificity phosphatas... | NM_001320843.1 | 99.4% | 98.9% | 13C>G;315C>T;467G>A |
| 2 | human | 51207 | DUSP13 | dual specificity phosphatas... | NM_016364.3 | 99.4% | 98.9% | 13C>G;315C>T;467G>A |
| 3 | human | 51207 | DUSP13 | dual specificity phosphatas... | XM_005269890.1 | 99.4% | 98.9% | 13C>G;315C>T;467G>A |
| 4 | human | 51207 | DUSP13 | dual specificity phosphatas... | XM_011539854.2 | 99.4% | 98.9% | 13C>G;315C>T;467G>A |
| 5 | human | 51207 | DUSP13 | dual specificity phosphatas... | XM_011539855.2 | 99.4% | 98.9% | 13C>G;315C>T;467G>A |
| 6 | human | 51207 | DUSP13 | dual specificity phosphatas... | XM_011539856.2 | 99.4% | 98.9% | 13C>G;315C>T;467G>A |
| 7 | human | 51207 | DUSP13 | dual specificity phosphatas... | XM_017016313.1 | 80% | 79.6% | (many diffs) |
| 8 | human | 51207 | DUSP13 | dual specificity phosphatas... | NM_001007272.2 | 79.4% | 79% | (many diffs) |
| 9 | human | 51207 | DUSP13 | dual specificity phosphatas... | NM_001007273.2 | 67.6% | 67.3% | (many diffs) |
| 10 | human | 51207 | DUSP13 | dual specificity phosphatas... | NM_001320842.2 | 67.6% | 67.3% | (many diffs) |
| 11 | human | 51207 | DUSP13 | dual specificity phosphatas... | XM_005269887.1 | 67.6% | 67.3% | (many diffs) |
| 12 | human | 51207 | DUSP13 | dual specificity phosphatas... | XM_011539853.1 | 60.2% | 59.9% | (many diffs) |
| 13 | human | 51207 | DUSP13 | dual specificity phosphatas... | NM_001363514.1 | 58.9% | 58.6% | (many diffs) |
| 14 | human | 51207 | DUSP13 | dual specificity phosphatas... | XM_005269883.3 | 47.2% | 47% | (many diffs) |
| 15 | mouse | 27389 | Dusp13 | dual specificity phosphatas... | XM_006519076.3 | 86.1% | 87.3% | (many diffs) |
| 16 | mouse | 27389 | Dusp13 | dual specificity phosphatas... | XM_011245080.2 | 77.2% | 78.2% | (many diffs) |
| 17 | mouse | 27389 | Dusp13 | dual specificity phosphatas... | NM_013849.3 | 64.8% | 65.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 660
- ORF length:
- 594
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CTCACTGGAG AAGCAGGACC TCCGGAGGCC CAAGATCCAT GGGGCAGTCC 121 AGGCATCTCC CTACCAGCCG CCCACATTGG CTTCGCTGCA GCGCTTGCTG TGGGTCCGTC 181 AGGCTGCCAC ACTGAACCAT ATCGATGAGG TCTGGCCCAG CCTCTTCCTG GGAGATGCGT 241 ACGCAGCCCG GGACAAGAGC AAGCTGATCC AGCTGGGAAT CACCCACGTT GTGAATGCCG 301 CTGCAGGCAA GTTCCAGGTG GACACAGGTG CCAAATTCTA CCGTGGAATG TCCCTGGAGT 361 ACTATGGCAT CGAGGCGGAT GACAACCCCT TCTTCGACCT CAGTGTCTAC TTTCTGCCTG 421 TTGCTCGATA CATCCGAGCT GCCCTCAGTG TTCCCCAAGG CCGCGTGCTG GTACACTGTG 481 CCATGGGGGT AAGCCGCTCT GCCACACTTG TCCTGGCCTT CCTCATGATC TATGAGAACA 541 TGACGCTGGT AGAGGCCATC CAGACGGTGC AGGCCCACCG CAATATCTGC CCTAACTCAG 601 GCTTCCTCCG GCAGCTCCAG GTTCTGGACA ACCGACTGGG GCGGGAGACG GGGCGGTTCT 661 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 721 acgaac