Construct: ORF ccsbBroadEn_08274
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007299.1_s300c1, BRDN0000386540
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC22A17 (51310)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51310 | SLC22A17 | solute carrier family 22 me... | NM_020372.3 | 99.9% | 100% | 15C>T |
| 2 | human | 51310 | SLC22A17 | solute carrier family 22 me... | XM_005267747.4 | 99.9% | 100% | 15C>T |
| 3 | human | 51310 | SLC22A17 | solute carrier family 22 me... | XM_017021361.1 | 99.9% | 100% | 15C>T |
| 4 | human | 51310 | SLC22A17 | solute carrier family 22 me... | NM_016609.4 | 96.5% | 96.4% | 15C>T;1162_1163ins54 |
| 5 | human | 51310 | SLC22A17 | solute carrier family 22 me... | XM_017021362.2 | 96.5% | 96.4% | 15C>T;1162_1163ins54 |
| 6 | human | 51310 | SLC22A17 | solute carrier family 22 me... | XM_005267748.4 | 76.5% | 76.5% | 15C>T;837_838ins378 |
| 7 | human | 51310 | SLC22A17 | solute carrier family 22 me... | NM_001289050.1 | 56.1% | 55.9% | 0_1ins654;508_509ins54 |
| 8 | human | 51310 | SLC22A17 | solute carrier family 22 me... | NR_110290.1 | 49.4% | (many diffs) | |
| 9 | human | 51310 | SLC22A17 | solute carrier family 22 me... | XR_001750354.1 | 33.1% | (many diffs) | |
| 10 | human | 51310 | SLC22A17 | solute carrier family 22 me... | XR_002957556.1 | 32% | (many diffs) | |
| 11 | human | 51310 | SLC22A17 | solute carrier family 22 me... | XR_245694.4 | 31.9% | (many diffs) | |
| 12 | mouse | 59049 | Slc22a17 | solute carrier family 22 (o... | XM_006519337.3 | 88.6% | 94% | (many diffs) |
| 13 | mouse | 59049 | Slc22a17 | solute carrier family 22 (o... | XM_006519338.3 | 88.6% | 94% | (many diffs) |
| 14 | mouse | 59049 | Slc22a17 | solute carrier family 22 (o... | NM_021551.4 | 68.3% | 72.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1680
- ORF length:
- 1614
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAT 61 TGGGCATGGC CTCGGACCCT ATCTTCACGC TGGCGCCCCC GCTGCATTGC CACTACGGGG 121 CCTTCCCCCC TAATGCCTCT GGCTGGGAGC AGCCTCCCAA TGCCAGCGGC GTCAGCGTCG 181 CCAGCGCTGC CCTAGCAGCC AGCGCCGCCA GCCGTGTCGC CACCAGTACC GACCCCTCGT 241 GCAGCGGCTT CGCCCCGCCG GACTTCAACC ATTGCCTCAA GGATTGGGAC TATAATGGCC 301 TTCCTGTGCT CACCACCAAC GCCATCGGCC AGTGGGATCT GGTGTGTGAC CTGGGCTGGC 361 AGGTGATCCT GGAGCAGATC CTCTTCATCT TGGGCTTTGC CTCCGGCTAC CTGTTCCTGG 421 GTTACCCCGC AGACAGATTT GGCCGTCGCG GGATTGTGCT GCTGACCTTG GGGCTGGTGG 481 GCCCCTGTGG AGTAGGAGGG GCTGCTGCAG GCTCCTCCAC AGGCGTCATG GCCCTCCGAT 541 TCCTCTTGGG CTTTCTGCTT GCCGGTGTTG ACCTGGGTGT CTACCTGATG CGCCTGGAGC 601 TGTGCGACCC AACCCAGAGG CTTCGGGTGG CCCTGGCAGG GGAGTTGGTG GGGGTGGGAG 661 GGCACTTCCT GTTCCTGGGC CTGGCCCTTG TCTCTAAGGA TTGGCGATTC CTACAGCGAA 721 TGATCACCGC TCCCTGCATC CTCTTCCTGT TTTATGGCTG GCCTGGTTTG TTCCTGGAGT 781 CCGCACGGTG GCTGATAGTG AAGCGGCAGA TTGAGGAGGC TCAGTCTGTG CTGAGGATCC 841 TGGCTGAGCG AAACCGGCCC CATGGGCAGA TGCTGGGGGA GGAGGCCCAG GAGGCCCTGC 901 AGGACCTGGA GAATACCTGC CCTCTCCCTG CAACATCCTC CTTTTCCTTT GCTTCCCTCC 961 TCAACTACCG CAACATCTGG AAAAATCTGC TTATCCTGGG CTTCACCAAC TTCATTGCCC 1021 ATGCCATTCG CCACTGCTAC CAGCCTGTGG GAGGAGGAGG GAGCCCATCG GACTTCTACC 1081 TGTGCTCTCT GCTGGCCAGC GGCACCGCAG CCCTGGCCTG TGTCTTCCTG GGGGTCACCG 1141 TGGACCGATT TGGCCGCCGG GGCATCCTTC TTCTCTCCAT GACCCTTACC GGCATTGCTT 1201 CCCTGGTCCT GCTGGGCCTG TGGGATTGTG AGCATCCTAT CTTCCCCACA GTGTGGGCTC 1261 AACAAGGGAA CCCCAACAGA GATCTGAACG AGGCTGCCAT CACCACTTTC TCTGTCCTTG 1321 GGCTCTTCTC CTCCCAAGCT GCCGCCATCC TCAGCACCCT CCTTGCTGCT GAGGTCATCC 1381 CCACCACTGT CCGGGGCCGT GGCCTGGGCC TGATCATGGC TCTAGGGGCG CTTGGAGGAC 1441 TGAGCGGCCC GGCCCAGCGC CTCCACATGG GCCATGGAGC CTTCCTGCAG CACGTGGTGC 1501 TGGCGGCCTG CGCCCTCCTC TGCATTCTCA GCATTATGCT GCTGCCGGAG ACCAAGCGCA 1561 AGCTCCTGCC CGAGGTGCTC CGGGACGGGG AGCTGTGTCG CCGGCCTTCC CTGCTGCGGC 1621 AGCCACCCCC TACCCGCTGT GACCACGTCC CGCTGCTTGC CACCCCCAAC CCTGCCCTCT 1681 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1741 acgaac