GPP Web Portal - Clone Details

Construct: ORF ccsbBroadEn_08323

Construct Description:

Construct Type:: ORF
Other Identifiers:: ORF012830.1_s300c1, BRDN0000385132
DNA Barcode:: None
Epitope Tag:: None
Notes:: No stop codon in insert

Originally Annotated References:

Gene:: FAM49B (51571)

Vector Information:

Vector Backbone:: pDONR223
Pol II Cassette 1:: n/a
Pol II Cassette 2:: n/a
Selection Marker:: n/a
Visible Reporter:: n/a
Epitope Tag:: n/a

Current transcripts matched by this ORF:

	Taxon	Gene	Symbol	Description	Transcript	Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps)	Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps)	Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide.
1	human	51571	FAM49B	family with sequence simila...	NM_001256763.2	99.8%	99.6%	507C>A
2	human	51571	FAM49B	family with sequence simila...	NM_001353242.2	99.8%	99.6%	507C>A
3	human	51571	FAM49B	family with sequence simila...	NM_001353243.2	99.8%	99.6%	507C>A
4	human	51571	FAM49B	family with sequence simila...	NM_001353244.2	99.8%	99.6%	507C>A
5	human	51571	FAM49B	family with sequence simila...	NM_001353245.1	99.8%	99.6%	507C>A
6	human	51571	FAM49B	family with sequence simila...	NM_001353246.1	99.8%	99.6%	507C>A
7	human	51571	FAM49B	family with sequence simila...	NM_001353247.1	99.8%	99.6%	507C>A
8	human	51571	FAM49B	family with sequence simila...	NM_001353248.2	99.8%	99.6%	507C>A
9	human	51571	FAM49B	family with sequence simila...	NM_001353249.1	99.8%	99.6%	507C>A
10	human	51571	FAM49B	family with sequence simila...	NM_001353250.1	99.8%	99.6%	507C>A
11	human	51571	FAM49B	family with sequence simila...	NM_001353251.1	99.8%	99.6%	507C>A
12	human	51571	FAM49B	family with sequence simila...	NM_001353252.1	99.8%	99.6%	507C>A
13	human	51571	FAM49B	family with sequence simila...	NM_001353253.1	99.8%	99.6%	507C>A
14	human	51571	FAM49B	family with sequence simila...	NM_001353254.2	99.8%	99.6%	507C>A
15	human	51571	FAM49B	family with sequence simila...	NM_001353255.1	99.8%	99.6%	507C>A
16	human	51571	FAM49B	family with sequence simila...	NM_001353256.2	99.8%	99.6%	507C>A
17	human	51571	FAM49B	family with sequence simila...	NM_001353257.2	99.8%	99.6%	507C>A
18	human	51571	FAM49B	family with sequence simila...	NM_001353258.2	99.8%	99.6%	507C>A
19	human	51571	FAM49B	family with sequence simila...	NM_001353259.2	99.8%	99.6%	507C>A
20	human	51571	FAM49B	family with sequence simila...	NM_001353260.2	99.8%	99.6%	507C>A
21	human	51571	FAM49B	family with sequence simila...	NM_001353261.2	99.8%	99.6%	507C>A
22	human	51571	FAM49B	family with sequence simila...	NM_001353262.2	99.8%	99.6%	507C>A
23	human	51571	FAM49B	family with sequence simila...	NM_001353263.2	99.8%	99.6%	507C>A
24	human	51571	FAM49B	family with sequence simila...	NM_001353264.2	99.8%	99.6%	507C>A
25	human	51571	FAM49B	family with sequence simila...	NM_001353265.2	99.8%	99.6%	507C>A
26	human	51571	FAM49B	family with sequence simila...	NM_001353266.2	99.8%	99.6%	507C>A
27	human	51571	FAM49B	family with sequence simila...	NM_001353267.2	99.8%	99.6%	507C>A
28	human	51571	FAM49B	family with sequence simila...	NM_001353268.2	99.8%	99.6%	507C>A
29	human	51571	FAM49B	family with sequence simila...	NM_016623.5	99.8%	99.6%	507C>A
30	human	51571	FAM49B	family with sequence simila...	XM_011517112.3	99.8%	99.6%	507C>A
31	human	51571	FAM49B	family with sequence simila...	XM_011517121.3	99.8%	99.6%	507C>A
32	human	51571	FAM49B	family with sequence simila...	XM_017013545.2	99.8%	99.6%	507C>A
33	human	51571	FAM49B	family with sequence simila...	XM_017013548.1	99.8%	99.6%	507C>A
34	human	51571	FAM49B	family with sequence simila...	XM_017013551.2	99.8%	99.6%	507C>A
35	human	51571	FAM49B	family with sequence simila...	XM_024447180.1	99.8%	99.6%	507C>A
36	human	51571	FAM49B	family with sequence simila...	NM_001353302.1	96.9%	96.6%	(many diffs)
37	human	51571	FAM49B	family with sequence simila...	NM_001353303.1	96.9%	96.6%	(many diffs)
38	human	51571	FAM49B	family with sequence simila...	NM_001353304.1	96.9%	96.6%	(many diffs)
39	human	51571	FAM49B	family with sequence simila...	NM_001353305.1	96.9%	96.6%	(many diffs)
40	human	51571	FAM49B	family with sequence simila...	NM_001353306.2	96.9%	96.6%	(many diffs)
41	human	51571	FAM49B	family with sequence simila...	NM_001353307.2	96.9%	96.6%	(many diffs)
42	human	51571	FAM49B	family with sequence simila...	NM_001353308.1	96.9%	96.6%	(many diffs)
43	human	51571	FAM49B	family with sequence simila...	NM_001353309.1	96.9%	96.6%	(many diffs)
44	human	51571	FAM49B	family with sequence simila...	NM_001353310.2	96.9%	96.6%	(many diffs)
45	human	51571	FAM49B	family with sequence simila...	NM_001353311.2	96.9%	96.6%	(many diffs)
46	human	51571	FAM49B	family with sequence simila...	NM_001353312.2	96.9%	96.6%	(many diffs)
47	human	51571	FAM49B	family with sequence simila...	NM_001353313.2	96.9%	96.6%	(many diffs)
48	human	51571	FAM49B	family with sequence simila...	NM_001353314.2	96.9%	96.6%	(many diffs)
49	human	51571	FAM49B	family with sequence simila...	NM_001353315.2	96.9%	96.6%	(many diffs)
50	human	51571	FAM49B	family with sequence simila...	XM_017013554.2	96.9%	96.6%	(many diffs)
51	human	51571	FAM49B	family with sequence simila...	XM_017013557.2	96.9%	96.6%	(many diffs)
52	human	51571	FAM49B	family with sequence simila...	NM_001353316.2	94.7%	89.5%	(many diffs)
53	human	51571	FAM49B	family with sequence simila...	NM_001330612.2	54.8%	54.6%	0_1ins438;69C>A
54	human	51571	FAM49B	family with sequence simila...	NM_001353269.1	54.8%	54.6%	0_1ins438;69C>A
55	human	51571	FAM49B	family with sequence simila...	NM_001353270.1	54.8%	54.6%	0_1ins438;69C>A
56	human	51571	FAM49B	family with sequence simila...	NM_001353271.1	54.8%	54.6%	0_1ins438;69C>A
57	human	51571	FAM49B	family with sequence simila...	NM_001353272.1	54.8%	54.6%	0_1ins438;69C>A
58	human	51571	FAM49B	family with sequence simila...	NM_001353273.1	54.8%	54.6%	0_1ins438;69C>A
59	human	51571	FAM49B	family with sequence simila...	NM_001353274.1	54.8%	54.6%	0_1ins438;69C>A
60	human	51571	FAM49B	family with sequence simila...	NM_001353275.1	54.8%	54.6%	0_1ins438;69C>A
61	human	51571	FAM49B	family with sequence simila...	NM_001353276.2	54.8%	54.6%	0_1ins438;69C>A
62	human	51571	FAM49B	family with sequence simila...	NM_001353277.1	54.8%	54.6%	0_1ins438;69C>A
63	human	51571	FAM49B	family with sequence simila...	NM_001353278.1	54.8%	54.6%	0_1ins438;69C>A
64	human	51571	FAM49B	family with sequence simila...	NM_001353279.1	54.8%	54.6%	0_1ins438;69C>A
65	human	51571	FAM49B	family with sequence simila...	NM_001353280.1	54.8%	54.6%	0_1ins438;69C>A
66	human	51571	FAM49B	family with sequence simila...	NM_001353281.1	54.8%	54.6%	0_1ins438;69C>A
67	human	51571	FAM49B	family with sequence simila...	NM_001353282.2	54.8%	54.6%	0_1ins438;69C>A
68	human	51571	FAM49B	family with sequence simila...	NM_001353283.2	54.8%	54.6%	0_1ins438;69C>A
69	human	51571	FAM49B	family with sequence simila...	NM_001353284.2	54.8%	54.6%	0_1ins438;69C>A
70	human	51571	FAM49B	family with sequence simila...	NM_001353285.2	54.8%	54.6%	0_1ins438;69C>A
71	human	51571	FAM49B	family with sequence simila...	NM_001353286.2	54.8%	54.6%	0_1ins438;69C>A
72	human	51571	FAM49B	family with sequence simila...	NM_001353287.2	54.8%	54.6%	0_1ins438;69C>A
73	human	51571	FAM49B	family with sequence simila...	NM_001353288.2	54.8%	54.6%	0_1ins438;69C>A
74	human	51571	FAM49B	family with sequence simila...	NM_001353289.2	54.8%	54.6%	0_1ins438;69C>A
75	human	51571	FAM49B	family with sequence simila...	NM_001353290.2	54.8%	54.6%	0_1ins438;69C>A
76	human	51571	FAM49B	family with sequence simila...	NM_001353291.2	54.8%	54.6%	0_1ins438;69C>A
77	human	51571	FAM49B	family with sequence simila...	NM_001353292.2	54.8%	54.6%	0_1ins438;69C>A
78	human	51571	FAM49B	family with sequence simila...	NM_001353293.2	54.8%	54.6%	0_1ins438;69C>A
79	human	51571	FAM49B	family with sequence simila...	NM_001353294.2	54.8%	54.6%	0_1ins438;69C>A
80	human	51571	FAM49B	family with sequence simila...	NM_001353295.2	54.8%	54.6%	0_1ins438;69C>A
81	human	51571	FAM49B	family with sequence simila...	NM_001353296.2	54.8%	54.6%	0_1ins438;69C>A
82	human	51571	FAM49B	family with sequence simila...	NM_001353297.2	54.8%	54.6%	0_1ins438;69C>A
83	human	51571	FAM49B	family with sequence simila...	NM_001353298.2	54.8%	54.6%	0_1ins438;69C>A
84	human	51571	FAM49B	family with sequence simila...	NM_001353299.2	54.8%	54.6%	0_1ins438;69C>A
85	human	51571	FAM49B	family with sequence simila...	NM_001353300.2	54.8%	54.6%	0_1ins438;69C>A
86	human	51571	FAM49B	family with sequence simila...	NM_001353301.2	54.8%	54.6%	0_1ins438;69C>A
87	mouse	223601	Fam49b	family with sequence simila...	NM_144846.5	94.7%	99.3%	(many diffs)
88	mouse	223601	Fam49b	family with sequence simila...	XM_006520761.2	94.7%	99.3%	(many diffs)
89	mouse	223601	Fam49b	family with sequence simila...	XM_006520763.2	94.7%	99.3%	(many diffs)
90	mouse	223601	Fam49b	family with sequence simila...	XM_006520764.3	94.7%	99.3%	(many diffs)
91	mouse	223601	Fam49b	family with sequence simila...	XM_011245563.1	94.7%	99.3%	(many diffs)
92	mouse	223601	Fam49b	family with sequence simila...	XM_011245565.2	94.7%	99.3%	(many diffs)
93	mouse	223601	Fam49b	family with sequence simila...	XM_006520762.3	91.8%	96.2%	(many diffs)
94	mouse	223601	Fam49b	family with sequence simila...	XM_006520765.2	91.8%	96.2%	(many diffs)
95	mouse	223601	Fam49b	family with sequence simila...	XM_011245564.1	91.8%	96.2%	(many diffs)
96	mouse	223601	Fam49b	family with sequence simila...	XM_017316550.1	91.8%	96.2%	(many diffs)
97	mouse	223601	Fam49b	family with sequence simila...	XM_006520766.2	51.9%	54.3%	(many diffs)

Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:: 66
ORF end:: 1038
ORF length:: 972
Sequence:: 1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG

61 TTGGCATGGG GAATCTTCTT AAAGTTTTGA CATGCACAGA CCTTGAGCAG GGGCCAAATT

121 TTTTCCTTGA TTTTGAAAAT GCCCAGCCTA CAGAGTCTGA GAAGGAAATT TATAATCAGG

181 TGAATGTAGT ATTAAAAGAT GCAGAAGGCA TCTTGGAGGA CTTGCAGTCA TACAGAGGAG

241 CTGGCCACGA AATACGAGAG GCAATCCAGC ATCCAGCAGA TGAGAAGTTG CAAGAGAAGG

301 CATGGGGTGC AGTTGTTCCA CTAGTAGGCA AATTAAAGAA ATTTTACGAA TTTTCTCAGA

361 GGTTAGAAGC AGCATTAAGA GGTCTTCTGG GAGCCTTAAC AAGTACCCCA TATTCTCCCA

421 CCCAGCATCT AGAGCGAGAG CAGGCTCTTG CTAAACAGTT TGCAGAAATT CTTCATTTCA

481 CACTCCGGTT TGATGAACTC AAGATGACAA ATCCTGCCAT ACAGAATGAT TTCAGCTATT

541 ATAGAAGAAC ATTGAGTCGT ATGAGGATTA AAAATGTACC GGCAGAAGGA GAAAATGAAG

601 TAAATAATGA ATTGGCAAAT CGAATGTCTT TGTTTTATGC TGAGGCAACT CCAATGCTGA

661 AAACCTTGAG TGATGCCACA ACAAAATTTG TATCAGAGAA TAAAAATTTA CCAATAGAAA

721 ATACCACAGA TTGTTTAAGC ACAATGGCTA GTGTATGCAG AGTCATGCTG GAAACACCGG

781 AATACAGAAG CAGATTTACA AATGAAGAGA CAGTGTCATT CTGCTTGAGG GTAATGGTGG

841 GTGTCATAAT ACTCTATGAC CACGTACATC CAGTGGGAGC ATTTGCTAAA ACTTCCAAAA

901 TTGATATGAA AGGTTGTATC AAAGTTCTTA AGGACCAACC TCCTAATAGT GTGGAAGGTC

961 TTCTAAATGC TCTCAGGTAC ACAACAAAAC ATTTGAATGA TGAGACTACC TCCAAGCAAA

1021 TTAAATCCAT GCTGCAATAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt

1081 gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

1	gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61	TTGGCATGGG GAATCTTCTT AAAGTTTTGA CATGCACAGA CCTTGAGCAG GGGCCAAATT
121	TTTTCCTTGA TTTTGAAAAT GCCCAGCCTA CAGAGTCTGA GAAGGAAATT TATAATCAGG
181	TGAATGTAGT ATTAAAAGAT GCAGAAGGCA TCTTGGAGGA CTTGCAGTCA TACAGAGGAG
241	CTGGCCACGA AATACGAGAG GCAATCCAGC ATCCAGCAGA TGAGAAGTTG CAAGAGAAGG
301	CATGGGGTGC AGTTGTTCCA CTAGTAGGCA AATTAAAGAA ATTTTACGAA TTTTCTCAGA
361	GGTTAGAAGC AGCATTAAGA GGTCTTCTGG GAGCCTTAAC AAGTACCCCA TATTCTCCCA
421	CCCAGCATCT AGAGCGAGAG CAGGCTCTTG CTAAACAGTT TGCAGAAATT CTTCATTTCA
481	CACTCCGGTT TGATGAACTC AAGATGACAA ATCCTGCCAT ACAGAATGAT TTCAGCTATT
541	ATAGAAGAAC ATTGAGTCGT ATGAGGATTA AAAATGTACC GGCAGAAGGA GAAAATGAAG
601	TAAATAATGA ATTGGCAAAT CGAATGTCTT TGTTTTATGC TGAGGCAACT CCAATGCTGA
661	AAACCTTGAG TGATGCCACA ACAAAATTTG TATCAGAGAA TAAAAATTTA CCAATAGAAA
721	ATACCACAGA TTGTTTAAGC ACAATGGCTA GTGTATGCAG AGTCATGCTG GAAACACCGG
781	AATACAGAAG CAGATTTACA AATGAAGAGA CAGTGTCATT CTGCTTGAGG GTAATGGTGG
841	GTGTCATAAT ACTCTATGAC CACGTACATC CAGTGGGAGC ATTTGCTAAA ACTTCCAAAA
901	TTGATATGAA AGGTTGTATC AAAGTTCTTA AGGACCAACC TCCTAATAGT GTGGAAGGTC
961	TTCTAAATGC TCTCAGGTAC ACAACAAAAC ATTTGAATGA TGAGACTACC TCCAAGCAAA
1021	TTAAATCCAT GCTGCAATAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1081	gcttatcaat ttgttgcaac gaac