Construct: ORF ccsbBroadEn_08337
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009487.1_s300c1, BRDN0000398165
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PADI3 (51702)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51702 | PADI3 | peptidyl arginine deiminase 3 | NM_016233.2 | 99.9% | 100% | 1869G>T |
| 2 | human | 51702 | PADI3 | peptidyl arginine deiminase 3 | XM_011541571.2 | 94.2% | 94.2% | 0_1ins114;1755G>T |
| 3 | human | 51702 | PADI3 | peptidyl arginine deiminase 3 | XM_017001463.1 | 72.9% | 73% | 0_1ins537;1332G>T |
| 4 | human | 51702 | PADI3 | peptidyl arginine deiminase 3 | XM_011541572.2 | 63.4% | 56.7% | 1154_1155ins152;1263_1264ins577 |
| 5 | mouse | 18601 | Padi3 | peptidyl arginine deiminase... | NM_011060.4 | 84.6% | 87.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2061
- ORF length:
- 1992
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCGCTGCAG AGAATCGTGC GTGTGTCCCT GGAGCATCCC ACCAGCGCGG 121 TGTGTGTGGC TGGCGTGGAG ACCCTCGTGG ACATTTATGG GTCAGTGCCT GAGGGCACAG 181 AAATGTTTGA GGTCTATGGG ACGCCTGGCG TGGACATCTA CATCTCTCCC AACATGGAGA 241 GGGGCCGGGA GCGTGCAGAC ACCAGGCGGT GGCGCTTTGA CGCGACTTTG GAGATCATCG 301 TGGTCATGAA CTCCCCCAGC AATGACCTCA ACGACAGCCA TGTTCAGATT TCCTACCACT 361 CCAGCCATGA GCCTCTGCCC CTGGCCTATG CGGTGCTCTA CCTCACCTGT GTTGACATCT 421 CTCTGGATTG CGACCTGAAC TGTGAGGGAA GGCAGGACAG GAACTTTGTA GACAAGCGGC 481 AGTGGGTCTG GGGGCCCAGT GGGTATGGCG GCATCTTGCT GGTGAACTGT GACCGTGATG 541 ATCCGAGCTG TGATGTCCAG GACAATTGTG ACCAGCACGT GCACTGCCTG CAAGACCTGG 601 AAGACATGTC TGTCATGGTC CTGCGGACGC AGGGCCCTGC AGCCCTCTTT GATGACCACA 661 AACTTGTCCT CCATACCTCC AGCTATGATG CCAAACGGGC ACAGGTCTTC CACATCTGCG 721 GTCCTGAGGA TGTGTGTGAG GCCTATAGGC ATGTGCTGGG CCAAGATAAG GTGTCCTATG 781 AGGTACCCCG CTTGCATGGG GATGAGGAGC GCTTCTTCGT GGAAGGCCTG TCCTTCCCTG 841 ATGCCGGCTT CACAGGACTC ATCTCCTTCC ATGTCACTCT GCTGGACGAC TCCAACGAGG 901 ATTTCTCGGC ATCCCCTATC TTCACTGACA CTGTGGTGTT CCGAGTGGCA CCCTGGATCA 961 TGACGCCCAG CACTCTGCCA CCCCTAGAGG TGTATGTGTG CCGTGTGAGG AACAACACGT 1021 GTTTTGTGGA TGCGGTGGCA GAGCTGGCCA GGAAGGCCGG CTGCAAGCTG ACCATCTGCC 1081 CACAGGCCGA GAACCGCAAC GACCGCTGGA TCCAGGATGA GATGGAGCTG GGCTACGTTC 1141 AGGCGCCGCA CAAGACCCTC CCGGTGGTCT TTGACTCCCC AAGGAATGGG GAACTGCAGG 1201 ATTTCCCTTA CAAAAGAATC CTGGGTCCAG ATTTTGGTTA CGTGACTCGG GAACCACGCG 1261 ACAGGTCTGT GAGTGGCCTG GACTCCTTTG GGAACCTGGA GGTCAGCCCT CCAGTGGTGG 1321 CCAATGGGAA AGAGTACCCC CTGGGGAGGA TCCTCATTGG GGGCAACCTG CCTGGGTCAA 1381 GTGGCCGCAG GGTCACCCAG GTGGTGCGGG ACTTCCTCCA TGCCCAGAAG GTGCAGCCCC 1441 CCGTGGAGCT CTTTGTGGAC TGGTTGGCCG TGGGCCATGT GGATGAGTTT CTGAGCTTTG 1501 TCCCTGCCCC CGATGGGAAG GGCTTCCGGA TGCTCCTGGC CAGCCCTGGG GCCTGCTTCA 1561 AGCTCTTCCA GGAAAAGCAG AAGTGTGGCC ACGGGAGGGC CCTCCTGTTC CAGGGGGTTG 1621 TTGATGATGA GCAGGTCAAG ACCATCTCCA TCAACCAGGT GCTCTCCAAT AAAGACCTCA 1681 TCAACTACAA TAAGTTTGTG CAGAGCTGCA TCGACTGGAA CCGTGAGGTG CTGAAGCGGG 1741 AGCTGGGCCT GGCAGAGTGT GACATCATTG ACATCCCACA GCTCTTCAAG ACCGAGAGGA 1801 AAAAAGCAAC GGCCTTCTTC CCTGACTTGG TGAACATGCT GGTGCTGGGG AAGCACCTGG 1861 GCATCCCCAA GCCCTTTGGG CCCATCATCA ATGGCTGCTG CTGCCTGGAG GAGAAGGTGC 1921 GGTCCCTGCT GGAGCCTCTG GGCCTCCACT GCACCTTCAT TGATGACTTC ACTCCATACC 1981 ACATGCTGCA TGGGGAGGTG CACTGTGGCA CCAATGTGTG CAGAAAGCCC TTCTCTTTCA 2041 AGTGGTGGAA CATGGTGCCC TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 2101 attgcttatc aatttgttgc aacgaac