Construct: ORF ccsbBroadEn_08345
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001123.1_s300c1, BRDN0000396788
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SYT17 (51760)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51760 | SYT17 | synaptotagmin 17 | NM_016524.4 | 99.9% | 100% | 612C>T |
| 2 | human | 51760 | SYT17 | synaptotagmin 17 | NM_001308157.2 | 99% | 98.9% | 0_1insATGGCGTAC;2_3insCCA;600C>T |
| 3 | human | 51760 | SYT17 | synaptotagmin 17 | XM_011545868.1 | 98.6% | 98.7% | 13_14insAGTTGGAACCATTAAACG;594C>T |
| 4 | human | 51760 | SYT17 | synaptotagmin 17 | XM_011545866.3 | 97.4% | 97.7% | 1_28del;33_33delGinsCGTACATC;633C>T |
| 5 | human | 51760 | SYT17 | synaptotagmin 17 | NM_001330509.1 | 87% | 87.1% | 0_1ins183;429C>T |
| 6 | human | 51760 | SYT17 | synaptotagmin 17 | XM_005255362.3 | 87% | 87.1% | 0_1ins183;429C>T |
| 7 | human | 51760 | SYT17 | synaptotagmin 17 | XM_011545869.2 | 87% | 87.1% | 0_1ins183;429C>T |
| 8 | human | 51760 | SYT17 | synaptotagmin 17 | XM_011545871.2 | 87% | 87.1% | 0_1ins183;429C>T |
| 9 | human | 51760 | SYT17 | synaptotagmin 17 | XM_011545872.2 | 87% | 87.1% | 0_1ins183;429C>T |
| 10 | human | 51760 | SYT17 | synaptotagmin 17 | XM_017023281.1 | 87% | 87.1% | 0_1ins183;429C>T |
| 11 | human | 51760 | SYT17 | synaptotagmin 17 | XM_024450297.1 | 87% | 87.1% | 0_1ins183;429C>T |
| 12 | human | 51760 | SYT17 | synaptotagmin 17 | XM_017023280.1 | 86.8% | 87% | (many diffs) |
| 13 | mouse | 110058 | Syt17 | synaptotagmin XVII | XM_006507204.3 | 88.3% | 96.2% | (many diffs) |
| 14 | mouse | 110058 | Syt17 | synaptotagmin XVII | NM_138649.1 | 87.4% | 95.1% | (many diffs) |
| 15 | mouse | 110058 | Syt17 | synaptotagmin XVII | XM_006507203.2 | 85.6% | 93.5% | (many diffs) |
| 16 | mouse | 110058 | Syt17 | synaptotagmin XVII | XM_006507205.3 | 77.2% | 84.5% | (many diffs) |
| 17 | mouse | 110058 | Syt17 | synaptotagmin XVII | XM_006507206.3 | 77.2% | 84.5% | (many diffs) |
| 18 | mouse | 110058 | Syt17 | synaptotagmin XVII | XM_006507202.2 | 71.7% | 77.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1488
- ORF length:
- 1422
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 CTGGCATGGC GTACATCCAG TTGGAACCAT TAAACGAGGG TTTTCTTTCT AGAATCTCTG 121 GTCTGCTGCT GTGCAGATGG ACCTGCCGGC ACTGCTGTCA GAAGTGCTAC GAGTCCAGCT 181 GTTGCCAGTC AAGTGAGGAT GAAGTTGAAA TTCTGGGACC TTTCCCTGCT CAGACCCCTC 241 CCTGGCTGAT GGCCAGCCGG AGCAGTGACA AGGATGGTGA CTCTGTCCAC ACGGCCAGCG 301 AAGTCCCGCT GACCCCACGG ACCAATTCCC CGGATGGAAG ACGCTCGTCC TCAGACACAT 361 CCAAGTCTAC ATACAGCCTG ACGCGGAGGA TTTCGAGTCT TGAGTCAAGA CGTCCCAGCT 421 CTCCACTCAT CGATATTAAA CCCATCGAGT TTGGCGTTCT CAGCGCCAAG AAGGAGCCCA 481 TCCAACCTTC GGTGCTCAGA CGGACCTATA ACCCCGACGA CTATTTCAGG AAGTTCGAAC 541 CCCACCTGTA CTCCCTCGAC TCCAACAGCG ACGATGTGGA CTCTCTGACA GACGAGGAGA 601 TCCTGTCCAA GTACCAGCTG GGCATGCTGC ACTTCAGCAC TCAGTACGAC CTGCTGCACA 661 ACCACCTCAC CGTGCGTGTG ATCGAGGCCA GGGACCTGCC ACCTCCCATC TCCCACGATG 721 GCTCGCGCCA GGACATGGCG CACTCCAACC CCTACGTCAA GATCTGTCTC CTGCCAGACC 781 AGAAGAACTC AAAGCAGACC GGGGTCAAAC GCAAGACCCA GAAGCCCGTG TTTGAGGAGC 841 GCTACACCTT CGAGATCCCC TTCCTGGAGG CCCAGAGGAG GACCCTGCTC CTGACCGTGG 901 TGGATTTTGA TAAGTTCTCC CGCCACTGTG TCATTGGGAA AGTTTCTGTG CCTTTGTGTG 961 AAGTTGACCT GGTCAAGGGC GGGCACTGGT GGAAGGCGCT GATTCCCAGT TCTCAGAATG 1021 AAGTGGAGCT GGGGGAGCTG CTTCTGTCAC TGAATTATCT CCCAAGTGCT GGCAGACTGA 1081 ATGTTGATGT CATTCGAGCC AAGCAACTTC TTCAGACAGA TGTGAGCCAA GGTTCAGACC 1141 CCTTTGTGAA AATCCAGCTG GTGCATGGAC TCAAACTTGT GAAAACCAAG AAGACGTCCT 1201 TCTTAAGGGG CACAATTGAT CCTTTCTACA ATGAATCCTT CAGCTTCAAA GTTCCCCAAG 1261 AAGAACTGGA AAATGCCAGC CTAGTGTTTA CAGTTTTCGG CCACAACATG AAGAGCAGCA 1321 ATGACTTCAT CGGGAGGATC GTCATTGGCC AGTACTCTTC AGGCCCCTCT GAGACCAACC 1381 ACTGGAGGCG CATGCTCAAC ACGCACCGCA CAGCCGTGGA GCAGTGGCAT AGCCTGAGGT 1441 CCCGAGCTGA GTGTGACCGC GTGTCTCCTG CCTCCCTGGA GGTGACCTGC CCGACTTTCT 1501 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac