Transcript: Human XM_017023280.1

PREDICTED: Homo sapiens synaptotagmin 17 (SYT17), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SYT17 (51760)
Length:
1795
CDS:
429..1790

Additional Resources:

NCBI RefSeq record:
XM_017023280.1
NBCI Gene record:
SYT17 (51760)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017023280.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000001449 GCTCTCCACTCATCGATATTA pLKO.1 781 CDS 100% 15.000 21.000 N SYT17 n/a
2 TRCN0000381422 AGCTCTCCACTCATCGATATT pLKO_005 780 CDS 100% 13.200 18.480 N SYT17 n/a
3 TRCN0000382214 GGTGCTCAGACGGACCTATAA pLKO_005 854 CDS 100% 13.200 18.480 N SYT17 n/a
4 TRCN0000001450 CCAAGTCTACATACAGCCTGA pLKO.1 724 CDS 100% 2.160 3.024 N SYT17 n/a
5 TRCN0000380518 AGCTGGTGCATGGACTCAAAC pLKO_005 1519 CDS 100% 10.800 7.560 N SYT17 n/a
6 TRCN0000381018 CCAGACCAGAAGAACTCAAAG pLKO_005 1137 CDS 100% 10.800 7.560 N SYT17 n/a
7 TRCN0000382049 GACACATCCAAGTCTACATAC pLKO_005 717 CDS 100% 10.800 7.560 N SYT17 n/a
8 TRCN0000001451 CTGGTGCATGGACTCAAACTT pLKO.1 1521 CDS 100% 5.625 3.938 N SYT17 n/a
9 TRCN0000381175 ACGCGGAGGATTTCGAGTCTT pLKO_005 744 CDS 100% 4.950 3.465 N SYT17 n/a
10 TRCN0000001448 GCCAGACCAGAAGAACTCAAA pLKO.1 1136 CDS 100% 4.950 3.465 N SYT17 n/a
11 TRCN0000382489 CATCGAGTTTGGCGTTCTCAG pLKO_005 806 CDS 100% 4.050 2.835 N SYT17 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017023280.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08345 pDONR223 100% 86.8% 87% None (many diffs) n/a
2 ccsbBroad304_08345 pLX_304 0% 86.8% 87% V5 (many diffs) n/a
3 TRCN0000472364 CAGGTTCCACTTTATGCTGCGGAG pLX_317 30.2% 86.8% 87% V5 (many diffs) n/a
4 TRCN0000487926 GCTTCGGCTGTTCTTATACGTTGG pLX_317 18.3% 86.8% 87% V5 (not translated due to prior stop codon) (many diffs) n/a
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