Construct: ORF ccsbBroadEn_08388

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014169.1_s300c1, BRDN0000394217
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CPVL (54504)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54504 CPVL carboxypeptidase vitellogen... NM_001348052.1 99.9% 99.7% 1304C>T
2 human 54504 CPVL carboxypeptidase vitellogen... NM_001348054.1 99.9% 99.7% 1304C>T
3 human 54504 CPVL carboxypeptidase vitellogen... NM_001371255.1 99.9% 99.7% 1304C>T
4 human 54504 CPVL carboxypeptidase vitellogen... NM_001371256.1 99.9% 99.7% 1304C>T
5 human 54504 CPVL carboxypeptidase vitellogen... NM_001371257.1 99.9% 99.7% 1304C>T
6 human 54504 CPVL carboxypeptidase vitellogen... NM_001371258.1 99.9% 99.7% 1304C>T
7 human 54504 CPVL carboxypeptidase vitellogen... NM_001371260.1 99.9% 99.7% 1304C>T
8 human 54504 CPVL carboxypeptidase vitellogen... NM_001371261.1 99.9% 99.7% 1304C>T
9 human 54504 CPVL carboxypeptidase vitellogen... NM_001371262.1 99.9% 99.7% 1304C>T
10 human 54504 CPVL carboxypeptidase vitellogen... NM_001371263.1 99.9% 99.7% 1304C>T
11 human 54504 CPVL carboxypeptidase vitellogen... NM_019029.3 99.9% 99.7% 1304C>T
12 human 54504 CPVL carboxypeptidase vitellogen... NM_031311.5 99.9% 99.7% 1304C>T
13 human 54504 CPVL carboxypeptidase vitellogen... XM_011515437.1 99.9% 99.7% 1304C>T
14 human 54504 CPVL carboxypeptidase vitellogen... NM_001371264.1 97% 96.9% 608_649del;1346C>T
15 human 54504 CPVL carboxypeptidase vitellogen... NM_001371265.1 85.2% 85% 0_1ins210;1094C>T
16 human 54504 CPVL carboxypeptidase vitellogen... NM_001371266.1 85.2% 85% 0_1ins210;1094C>T
17 human 54504 CPVL carboxypeptidase vitellogen... NM_001371267.1 85.2% 85% 0_1ins210;1094C>T
18 human 54504 CPVL carboxypeptidase vitellogen... XM_017012366.1 80.8% 80.6% 864_865ins273;1031C>T
19 human 54504 CPVL carboxypeptidase vitellogen... NM_001371268.1 62.5% 54.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1494
ORF length:
1428
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT TGGTGCCATG TGGAAGGTGA TTGTTTCGCT GGTCCTGTTG ATGCCTGGCC
121CCTGTGATGG GCTGTTTCGC TCCCTATACA GAAGTGTTTC CATGCCACCT AAGGGAGACT
181CAGGACAGCC ATTATTTCTC ACCCCTTACA TTGAAGCTGG GAAGATCCAA AAAGGAAGAG
241AATTGAGTTT GGTCGGCCCT TTCCCAGGAC TGAACATGAA GAGTTATGCC GGCTTCCTCA
301CCGTGAATAA GACTTACAAC AGCAACCTCT TCTTCTGGTT CTTCCCAGCT CAGATACAGC
361CAGAAGATGC CCCAGTAGTT CTCTGGCTAC AGGGTGGGCC GGGAGGTTCA TCCATGTTTG
421GACTCTTTGT GGAACATGGG CCTTATGTTG TCACAAGTAA CATGACCTTG CGTGACAGAG
481ACTTCCCCTG GACCACAACG CTCTCCATGC TTTACATTGA CAATCCAGTG GGCACAGGCT
541TCAGTTTTAC TGATGATACC CACGGATATG CAGTCAATGA GGACGATGTA GCACGGGATT
601TATACAGTGC ACTAATTCAG TTTTTCCAGA TATTTCCTGA ATATAAAAAT AATGACTTTT
661ATGTCACTGG GGAGTCTTAT GCAGGGAAAT ATGTGCCAGC CATTGCACAC CTCATCCATT
721CCCTCAACCC TGTGAGAGAG GTGAAGATCA ACCTGAACGG AATTGCTATT GGAGATGGAT
781ATTCTGATCC CGAATCAATT ATAGGGGGCT ATGCAGAATT CCTGTACCAA ATTGGCTTGT
841TGGATGAGAA GCAAAAAAAG TACTTCCAGA AGCAGTGCCA TGAATGCATA GAACACATCA
901GGAAGCAGAA CTGGTTTGAG GCCTTTGAAA TACTGGATAA ACTACTAGAT GGCGACTTAA
961CAAGTGATCC TTCTTACTTC CAGAATGTTA CAGGATGTAG TAATTACTAT AACTTTTTGC
1021GGTGCACGGA ACCTGAGGAT CAGCTTTACT ATGTGAAATT TTTGTCACTC CCAGAGGTGA
1081GACAAGCCAT CCACGTGGGG AATCAGACTT TTAATGATGG AACTATAGTT GAAAAGTACT
1141TGCGAGAAGA TACAGTACAG TCAGTTAAGC CATGGTTAAC TGAAATCATG AATAATTATA
1201AGGTTCTGAT CTACAATGGC CAACTGGACA TCATCGTGGC AGCTGCCCTG ACAGAGCGCT
1261CCTTGATGGG CATGGACTGG AAAGGATCCC AGGAATACAA GAAGGCAGAA AAAAAAGTTT
1321GGAAGATCTT TAAATCTGAC AGTGAAGTGG CTGGTTACAT CCGGCAAGTG GGTGACTTCC
1381ATCAGGTAAT TATTCGAGGT GGAGGACATA TTTTACCCTA TGACCAGCCT CTGAGAGCTT
1441TTGACATGAT TAATCGATTC ATTTATGGAA AAGGATGGGA TCCTTATGTT GGATACTCAA
1501CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)