Construct: ORF ccsbBroadEn_08388
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014169.1_s300c1, BRDN0000394217
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CPVL (54504)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001348052.1 | 99.9% | 99.7% | 1304C>T |
| 2 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001348054.1 | 99.9% | 99.7% | 1304C>T |
| 3 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371255.1 | 99.9% | 99.7% | 1304C>T |
| 4 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371256.1 | 99.9% | 99.7% | 1304C>T |
| 5 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371257.1 | 99.9% | 99.7% | 1304C>T |
| 6 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371258.1 | 99.9% | 99.7% | 1304C>T |
| 7 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371260.1 | 99.9% | 99.7% | 1304C>T |
| 8 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371261.1 | 99.9% | 99.7% | 1304C>T |
| 9 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371262.1 | 99.9% | 99.7% | 1304C>T |
| 10 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371263.1 | 99.9% | 99.7% | 1304C>T |
| 11 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_019029.3 | 99.9% | 99.7% | 1304C>T |
| 12 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_031311.5 | 99.9% | 99.7% | 1304C>T |
| 13 | human | 54504 | CPVL | carboxypeptidase vitellogen... | XM_011515437.1 | 99.9% | 99.7% | 1304C>T |
| 14 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371264.1 | 97% | 96.9% | 608_649del;1346C>T |
| 15 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371265.1 | 85.2% | 85% | 0_1ins210;1094C>T |
| 16 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371266.1 | 85.2% | 85% | 0_1ins210;1094C>T |
| 17 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371267.1 | 85.2% | 85% | 0_1ins210;1094C>T |
| 18 | human | 54504 | CPVL | carboxypeptidase vitellogen... | XM_017012366.1 | 80.8% | 80.6% | 864_865ins273;1031C>T |
| 19 | human | 54504 | CPVL | carboxypeptidase vitellogen... | NM_001371268.1 | 62.5% | 54.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1494
- ORF length:
- 1428
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT TGGTGCCATG TGGAAGGTGA TTGTTTCGCT GGTCCTGTTG ATGCCTGGCC 121 CCTGTGATGG GCTGTTTCGC TCCCTATACA GAAGTGTTTC CATGCCACCT AAGGGAGACT 181 CAGGACAGCC ATTATTTCTC ACCCCTTACA TTGAAGCTGG GAAGATCCAA AAAGGAAGAG 241 AATTGAGTTT GGTCGGCCCT TTCCCAGGAC TGAACATGAA GAGTTATGCC GGCTTCCTCA 301 CCGTGAATAA GACTTACAAC AGCAACCTCT TCTTCTGGTT CTTCCCAGCT CAGATACAGC 361 CAGAAGATGC CCCAGTAGTT CTCTGGCTAC AGGGTGGGCC GGGAGGTTCA TCCATGTTTG 421 GACTCTTTGT GGAACATGGG CCTTATGTTG TCACAAGTAA CATGACCTTG CGTGACAGAG 481 ACTTCCCCTG GACCACAACG CTCTCCATGC TTTACATTGA CAATCCAGTG GGCACAGGCT 541 TCAGTTTTAC TGATGATACC CACGGATATG CAGTCAATGA GGACGATGTA GCACGGGATT 601 TATACAGTGC ACTAATTCAG TTTTTCCAGA TATTTCCTGA ATATAAAAAT AATGACTTTT 661 ATGTCACTGG GGAGTCTTAT GCAGGGAAAT ATGTGCCAGC CATTGCACAC CTCATCCATT 721 CCCTCAACCC TGTGAGAGAG GTGAAGATCA ACCTGAACGG AATTGCTATT GGAGATGGAT 781 ATTCTGATCC CGAATCAATT ATAGGGGGCT ATGCAGAATT CCTGTACCAA ATTGGCTTGT 841 TGGATGAGAA GCAAAAAAAG TACTTCCAGA AGCAGTGCCA TGAATGCATA GAACACATCA 901 GGAAGCAGAA CTGGTTTGAG GCCTTTGAAA TACTGGATAA ACTACTAGAT GGCGACTTAA 961 CAAGTGATCC TTCTTACTTC CAGAATGTTA CAGGATGTAG TAATTACTAT AACTTTTTGC 1021 GGTGCACGGA ACCTGAGGAT CAGCTTTACT ATGTGAAATT TTTGTCACTC CCAGAGGTGA 1081 GACAAGCCAT CCACGTGGGG AATCAGACTT TTAATGATGG AACTATAGTT GAAAAGTACT 1141 TGCGAGAAGA TACAGTACAG TCAGTTAAGC CATGGTTAAC TGAAATCATG AATAATTATA 1201 AGGTTCTGAT CTACAATGGC CAACTGGACA TCATCGTGGC AGCTGCCCTG ACAGAGCGCT 1261 CCTTGATGGG CATGGACTGG AAAGGATCCC AGGAATACAA GAAGGCAGAA AAAAAAGTTT 1321 GGAAGATCTT TAAATCTGAC AGTGAAGTGG CTGGTTACAT CCGGCAAGTG GGTGACTTCC 1381 ATCAGGTAAT TATTCGAGGT GGAGGACATA TTTTACCCTA TGACCAGCCT CTGAGAGCTT 1441 TTGACATGAT TAATCGATTC ATTTATGGAA AAGGATGGGA TCCTTATGTT GGATACTCAA 1501 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac