Transcript: Human NM_001371265.1

Homo sapiens carboxypeptidase vitellogenic like (CPVL), transcript variant 14, mRNA.

Source:
NCBI, updated 2019-07-03
Taxon:
Homo sapiens (human)
Gene:
CPVL (54504)
Length:
3380
CDS:
1024..2244

Additional Resources:

NCBI RefSeq record:
NM_001371265.1
NBCI Gene record:
CPVL (54504)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001371265.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000322812 ACGATGTAGCACGGGATTTAT pLKO_005 1331 CDS 100% 15.000 21.000 N CPVL n/a
2 TRCN0000322811 GTGACTTCCATCAGGTAATTA pLKO_005 2120 CDS 100% 15.000 21.000 N CPVL n/a
3 TRCN0000322809 CGGCTTCCTCACCGTGAATAA pLKO_005 1038 CDS 100% 13.200 18.480 N CPVL n/a
4 TRCN0000322810 ACTACTAGATGGCGACTTAAC pLKO_005 1689 CDS 100% 10.800 15.120 N CPVL n/a
5 TRCN0000051048 CGCTCCCTATACAGAAGTGTT pLKO.1 610 5UTR 100% 4.950 6.930 N CPVL n/a
6 TRCN0000051050 CGGGATTTATACAGTGCACTA pLKO.1 1342 CDS 100% 4.050 5.670 N CPVL n/a
7 TRCN0000051049 GCGACTTAACAAGTGATCCTT pLKO.1 1700 CDS 100% 3.000 4.200 N CPVL n/a
8 TRCN0000322743 TGTTACAGGATGTAGTAATTA pLKO_005 1734 CDS 100% 15.000 10.500 N CPVL n/a
9 TRCN0000051052 GCCTTATGTTGTCACAAGTAA pLKO.1 1188 CDS 100% 5.625 3.938 N CPVL n/a
10 TRCN0000051051 CCTGTACCAAATTGGCTTGTT pLKO.1 1569 CDS 100% 4.950 3.465 N CPVL n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001371265.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08388 pDONR223 100% 85.2% 85% None 0_1ins210;1094C>T n/a
2 ccsbBroad304_08388 pLX_304 0% 85.2% 85% V5 0_1ins210;1094C>T n/a
3 TRCN0000470442 TGTGTACTGCTGTTACGGAATCCG pLX_317 32.1% 85.2% 85% V5 0_1ins210;1094C>T n/a
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