Construct: ORF ccsbBroadEn_08392

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001414.1_s300c1, BRDN0000396833
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EXOC6 (54536)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54536 EXOC6 exocyst complex component 6 NM_019053.6 99.9% 99.7% 1187C>T;2326A>G
2 human 54536 EXOC6 exocyst complex component 6 NM_001319195.2 99.7% 99.6% 1187C>T;1414_1415insAGC;2323A>G
3 human 54536 EXOC6 exocyst complex component 6 NM_001013848.3 97% 97% (many diffs)
4 human 54536 EXOC6 exocyst complex component 6 XM_017016345.2 97% 97% (many diffs)
5 human 54536 EXOC6 exocyst complex component 6 XM_017016346.2 96.9% 96.8% (many diffs)
6 human 54536 EXOC6 exocyst complex component 6 XM_017016347.2 96.2% 95.7% (many diffs)
7 human 54536 EXOC6 exocyst complex component 6 NM_001319194.2 95.9% 94.5% (many diffs)
8 human 54536 EXOC6 exocyst complex component 6 XM_017016344.2 95.8% 94.4% (many diffs)
9 human 54536 EXOC6 exocyst complex component 6 XM_024448047.1 94% 93.9% 0_1ins141;1046C>T;2185A>G
10 human 54536 EXOC6 exocyst complex component 6 NM_001319200.1 87.1% 87% 818_819ins69;902_903ins240;2017A>G
11 human 54536 EXOC6 exocyst complex component 6 XM_017016348.1 87% 84.1% (many diffs)
12 mouse 107371 Exoc6 exocyst complex component 6 NM_175353.2 88.7% 93.2% (many diffs)
13 mouse 107371 Exoc6 exocyst complex component 6 XM_017318044.1 86% 89.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2478
ORF length:
2412
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGAGAACAGC GAGAGTCTGG GCACCGTCCC CGAGCACGAG CGGATCTTGC
121AGGAGATCGA GAGCACCGAC ACCGCCTGTG TGGGGCCCAC CCTCCGGTCT GTGTATGATG
181ACCAACCAAA TGCGCACAAG AAGTTTATGG AAAAGTTAGA TGCTTGTATC CGTAATCATG
241ACAAGGAAAT TGAAAAGATG TGTAATTTTC ATCATCAGGG TTTTGTAGAT GCTATTACAG
301AACTCCTTAA AGTAAGGACT GATGCAGAAA AACTGAAGGT GCAAGTTACT GATACCAACC
361GAAGGTTTCA AGATGCTGGA AAAGAGGTGA TAGTCCACAC AGAAGATATC ATTCGATGTA
421GAATTCAGCA GAGAAATATT ACAACTGTAG TAGAAAAATT GCAGTTATGC CTTCCTGTGC
481TAGAAATGTA CAGTAAGCTG AAAGAACAGA TGAGTGCCAA AAGGTACTAT TCTGCCCTAA
541AAACTATGGA ACAATTAGAG AATGTGTACT TTCCCTGGGT TAGTCAATAC CGGTTTTGTC
601AGCTCATGAT AGAAAATCTT CCCAAACTCC GTGAGGATAT TAAAGAAATC TCCATGTCTG
661ATCTCAAAGA CTTTTTGGAA AGTATTCGAA AACATTCTGA CAAAATAGGT GAAACAGCAA
721TGAAACAGGC ACAGCATCAG AAAACCTTCA GTGTTTCTCT GCAGAAACAA AATAAAATGA
781AATTTGGGAA AAATATGTAT ATAAATCGTG ATAGAATTCC AGAGGAAAGG AATGAAACTG
841TATTGAAACA TTCACTTGAA GAAGAGGATG AGAATGAAGA AGAGATCTTA ACTGTTCAGG
901ATCTTGTTGA TTTTTCCCCT GTTTATCGAT GTTTGCACAT TTATTCTGTT TTGGGTGACG
961AGGAAACATT TGAAAACTAT TATCGAAAAC AAAGAAAGAA ACAAGCAAGA CTGGTATTGC
1021AACCCCAGTC GAATATGCAT GAAACAGTTG ATGGCTATAG AAGATATTTC ACTCAAATTG
1081TAGGGTTCTT TGTGGTAGAA GATCACATTT TACATGTGAC CCAAGGATTA GTAACCAGGG
1141CATACACTGA TGAACTTTGG AACATGGCCC TCTCAAAGAT AATTGCTGTC CTTAGAGCTC
1201ATTCATCCTA TTGCACTGAT CCTGATCTTG TTCTGGAGCT GAAGAATCTT ATTGTAATAT
1261TTGCAGATAC TTTACAGGGT TATGGTTTTC CAGTGAACCG ACTTTTTGAC CTTTTATTTG
1321AAATAAGAGA CCAATACAAT GAAACACTGC TTAAGAAATG GGCTGGAGTT TTCAGGGACA
1381TTTTTGAAGA AGATAATTAC AGCCCCATCC CTGTTGTCAA TGAAGAAGAA TATAAAATTG
1441TCATCAGCAA ATTTCCCTTT CAAGATCCAG ACCTTGAAAA GCAGTCTTTC CCAAAGAAAT
1501TCCCCATGTC TCAGTCAGTG CCTCATATTT ACATTCAAGT TAAAGAATTT ATTTATGCCA
1561GCCTTAAATT TTCAGAGTCA CTACACCGGA GCTCAACAGA AATAGACGAT ATGCTTAGAA
1621AATCAACAAA TCTGCTGCTG ACCAGAACTT TGAGTAGCTG TTTACTGAAC CTTATTAGAA
1681AACCTCATAT AGGTTTGACA GAGCTGGTAC AAATCATCAT AAACACAACA CACCTGGAGC
1741AAGCTTGTAA ATATCTTGAG GACTTTATAA CTAACATTAC AAATATTTCC CAAGAAACTG
1801TTCATACTAC AAGACTTTAT GGACTTTCTA CTTTCAAGGA TGCTCGACAT GCAGCAGAAG
1861GAGAAATATA TACCAAACTG AATCAAAAAA TTGATGAATT TGTTCAGCTT GCTGATTATG
1921ACTGGACAAT GTCTGAGCCA GATGGAAGAG CTAGTGGTTA TTTAATGGAC CTTATAAATT
1981TTTTGAGAAG CATCTTTCAA GTGTTTACTC ATTTGCCTGG GAAAGTTGCT CAGACAGCTT
2041GCATGTCAGC CTGCCAGCAT CTGTCAACAT CCTTAATGCA GATGCTACTG GACAGTGAGT
2101TAAAACAAAT AAGCATGGGA GCTGTTCAGC AGTTTAACTT AGATGTCATA CAGTGTGAAT
2161TGTTTGCCAG CTCTGAGCCT GTGCCAGGAT TCCAGGGGGA TACCCTGCAG CTAGCATTCA
2221TTGACCTCAG ACAACTCCTT GACCTGTTTA TGGTTTGGGA TTGGTCTACT TACCTAGCTG
2281ATTATGGGCA GCCAGCTTCT AAGTACCTTC GGGTGAATCC AAACACAGCC CTTACTCTTT
2341TGGAGAAGAT GAAGGATACT AGCAAAAAGA ACAATATATT TGCTCAGTTC GGGAAGAATG
2401ATCGAGACAA ACAGAAGTTG ATAGAGACAG TCGTGAAACA GCTGAGAAGT TTGGTGAATG
2461GTATGTCCCA GCACATGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
2521gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)