Transcript: Human NM_001013848.3

Homo sapiens exocyst complex component 6 (EXOC6), transcript variant 2, mRNA.

Source:
NCBI, updated 2018-09-24
Taxon:
Homo sapiens (human)
Gene:
EXOC6 (54536)
Length:
3696
CDS:
141..2540

Additional Resources:

NCBI RefSeq record:
NM_001013848.3
NBCI Gene record:
EXOC6 (54536)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001013848.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430500 CCAAACTCCGTGAGGATATTA pLKO_005 682 CDS 100% 15.000 21.000 N EXOC6 n/a
2 TRCN0000432288 TTAGATGCTTGTATCCGTAAT pLKO_005 276 CDS 100% 10.800 15.120 N EXOC6 n/a
3 TRCN0000062472 CCCAGTCGAATATGCATGAAA pLKO.1 1084 CDS 100% 5.625 7.875 N EXOC6 n/a
4 TRCN0000062469 GCTCAACAGAAATAGACGATA pLKO.1 1651 CDS 100% 4.950 6.930 N EXOC6 n/a
5 TRCN0000062468 GCAGTTTAACTTAGATGTCAT pLKO.1 2189 CDS 100% 4.950 3.960 N EXOC6 n/a
6 TRCN0000062471 CCCTTTCAAGATCCAGACCTT pLKO.1 1515 CDS 100% 2.640 2.112 N EXOC6 n/a
7 TRCN0000062470 GCAATGAAACAGGCACAGCAT pLKO.1 777 CDS 100% 2.640 2.112 N EXOC6 n/a
8 TRCN0000374981 GCTGTTTACTGAACCTTATTA pLKO_005 1717 CDS 100% 15.000 10.500 N Exoc6 n/a
9 TRCN0000422237 TGGTTATTTAATGGACCTTAT pLKO_005 2015 CDS 100% 10.800 7.560 N EXOC6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001013848.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08392 pDONR223 100% 97% 97% None (many diffs) n/a
2 ccsbBroad304_08392 pLX_304 0% 97% 97% V5 (many diffs) n/a
3 TRCN0000471944 ACTAAGCTACCCAAAATGATGTTT pLX_317 17.3% 97% 97% V5 (many diffs) n/a
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